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1XMA
Biol. Unit 1
Info
Asym.Unit (42 KB)
Biol.Unit 1 (37 KB)
Biol.Unit 2 (37 KB)
Biol.Unit 3 (38 KB)
Biol.Unit 4 (20 KB)
Biol.Unit 5 (20 KB)
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(1)
Title
:
STRUCTURE OF A TRANSCRIPTIONAL REGULATOR FROM CLOSTRIDIUM THERMOCELLUM CTH-833
Authors
:
H. Yang, L. Chen, D. Lee, J. Habel, J. Nguyen, S. -H. Chang, I. Kataeva, H. J. Chang, M. Zhao, P. Horanyi, Q. Florence, W. Zhou, W. Tempel, D. Lin, J. Praissman, H. Zhang, W. B. Arendall Iii, J. S. Richardson, D. C. Ric L. Ljungdahl, Z. -J. Liu, J. P. Rose, B. -C. Wang, Southeast Collabora Structural Genomics (Secsg)
Date
:
01 Oct 04 (Deposition) - 14 Dec 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.30
Chains
:
Asym. Unit : A,B
Biol. Unit 1: A,B (1x)
Biol. Unit 2: A,B (1x)
Biol. Unit 3: A,B (1x)
Biol. Unit 4: A (1x)
Biol. Unit 5: B (1x)
Keywords
:
Clostridium Thermocellum, Transcriptional Regulator, Southeast Collaboratory For Structural Genomics, Secsg, Protein Structure Initiative, Psi, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Yang, L. Chen, D. Lee, J. Habel, J. Nguyen, S. -H. Chang, I. Kataeva, H. Xu, J. Chang, M. Zhao, P. Horanyi, Q. Florence, W. Zhou, W. Tempel, D. Lin, J. Praissman, H. Zhang, W. B. Arendall Iii, J. S. Richardson, D. C. Richardson, L. Ljungdahl, Z. -J. Liu, J. P. Rose, B. -C. Wang, Southeast Collaboratory For Structural Genomics
Structure Of A Transcriptional Regulator From Clostridium Thermocellum Cth-833
To Be Published
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Hetero Components
(1, 13)
Info
All Hetero Components
1a: MERCURY (II) ION (HGa)
1b: MERCURY (II) ION (HGb)
1c: MERCURY (II) ION (HGc)
1d: MERCURY (II) ION (HGd)
2a: UNKNOWN ATOM OR ION (UNXa)
2b: UNKNOWN ATOM OR ION (UNXb)
2c: UNKNOWN ATOM OR ION (UNXc)
2d: UNKNOWN ATOM OR ION (UNXd)
2e: UNKNOWN ATOM OR ION (UNXe)
2f: UNKNOWN ATOM OR ION (UNXf)
2g: UNKNOWN ATOM OR ION (UNXg)
2h: UNKNOWN ATOM OR ION (UNXh)
2i: UNKNOWN ATOM OR ION (UNXi)
2j: UNKNOWN ATOM OR ION (UNXj)
2k: UNKNOWN ATOM OR ION (UNXk)
2l: UNKNOWN ATOM OR ION (UNXl)
2m: UNKNOWN ATOM OR ION (UNXm)
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No.
Name
Count
Type
Full Name
1
HG
-1
Ligand/Ion
MERCURY (II) ION
2
UNX
13
Ligand/Ion
UNKNOWN ATOM OR ION
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Sites
(17, 17)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
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No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
GLU B:21 , LYS B:36
BINDING SITE FOR RESIDUE HG B 115
02
AC2
SOFTWARE
VAL B:1
BINDING SITE FOR RESIDUE HG B 116
03
AC3
SOFTWARE
TYR A:87 , CYS A:91 , LYS B:106
BINDING SITE FOR RESIDUE HG A 115
04
AC4
SOFTWARE
CYS A:91 , GLU A:92
BINDING SITE FOR RESIDUE HG A 116
05
AC5
SOFTWARE
LEU B:40 , UNX B:402 , UNX B:412
BINDING SITE FOR RESIDUE UNX B 401
06
AC6
SOFTWARE
LEU B:40 , VAL B:42 , UNX B:401
BINDING SITE FOR RESIDUE UNX B 402
07
AC7
SOFTWARE
SER A:24 , ILE A:29 , ASN A:32 , UNX A:404
BINDING SITE FOR RESIDUE UNX A 403
08
AC8
SOFTWARE
LEU A:18 , GLY A:22 , UNX A:403 , UNX A:409 , UNX A:411
BINDING SITE FOR RESIDUE UNX A 404
09
AC9
SOFTWARE
ILE B:35 , ASP B:38 , UNX B:406
BINDING SITE FOR RESIDUE UNX B 405
10
BC1
SOFTWARE
GLU B:39 , UNX B:405
BINDING SITE FOR RESIDUE UNX B 406
11
BC2
SOFTWARE
TYR B:25 , GLY B:26 , THR B:75 , UNX B:408
BINDING SITE FOR RESIDUE UNX B 407
12
BC3
SOFTWARE
TYR B:49 , TYR B:77 , UNX B:407
BINDING SITE FOR RESIDUE UNX B 408
13
BC4
SOFTWARE
ASP A:23 , GLU A:28 , UNX A:404
BINDING SITE FOR RESIDUE UNX A 409
14
BC5
SOFTWARE
LEU B:18 , GLY B:22 , UNX B:413
BINDING SITE FOR RESIDUE UNX B 410
15
BC6
SOFTWARE
GLU A:21 , UNX A:404
BINDING SITE FOR RESIDUE UNX A 411
16
BC7
SOFTWARE
VAL B:1 , ILE B:2 , UNX B:401
BINDING SITE FOR RESIDUE UNX B 412
17
BC8
SOFTWARE
GLY B:22 , ASP B:23 , GLU B:28 , UNX B:410
BINDING SITE FOR RESIDUE UNX B 413
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1xmaa_ (A:)
1b: SCOP_d1xmab_ (B:)
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Protein Domains
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Organisms
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
PadR-like
(3)
Protein domain
:
Predicted transcriptional regulator
(1)
Clostridium thermocellum [TaxId: 1515]
(1)
1a
d1xmaa_
A:
1b
d1xmab_
B:
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CATH Domains
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all CATH domains
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_PadR_1xmaB01 (B:15-89)
1b: PFAM_PadR_1xmaB02 (B:15-89)
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Clan
:
HTH
(544)
Family
:
PadR
(4)
Clostridium thermocellum (strain ATCC 27405 / DSM 1237)
(1)
1a
PadR-1xmaB01
B:15-89
1b
PadR-1xmaB02
B:15-89
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Asymmetric Unit 1
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Show PDB file:
Asym.Unit (42 KB)
Header - Asym.Unit
Biol.Unit 1 (37 KB)
Header - Biol.Unit 1
Biol.Unit 2 (37 KB)
Header - Biol.Unit 2
Biol.Unit 3 (38 KB)
Header - Biol.Unit 3
Biol.Unit 4 (20 KB)
Header - Biol.Unit 4
Biol.Unit 5 (20 KB)
Header - Biol.Unit 5
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