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1WF8
Asym. Unit
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Asym.Unit (518 KB)
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Models
(20 )
Title
:
SOLUTION STRUCTURE OF THE PDZ DOMAIN OF SPINOPHILIN/NEURABINII PROTEIN
Authors
:
X. Qin, F. Hayashi, S. Yokoyama, Riken Structural Genomics/Proteomics Initiative (Rsgi)
Date
:
26 May 04 (Deposition) - 07 Jun 05 (Release) - 24 Feb 09 (Revision)
Method
:
SOLUTION NMR
Resolution
:
NOT APPLICABLE
Chains
:
Asym. Unit : A (20 x)
Keywords
:
Pdz Domain, Spinophilin/Neurabinii Protein, Structural Genomics, Nppsfa, National Project On Protein Structural And Functional Analyses, Riken Structural Genomics/Proteomics Initiative, Rsgi, Protein Binding
(Keyword Search:
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Reference
:
X. Qin, F. Hayashi, S. Yokoyama
Solution Structure Of The Pdz Domain Of Spinophilin/Neurabinii Protein
To Be Published
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
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Sites
(0, 0)
Info
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SAPs(SNPs)/Variants
(0, 0)
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: PDZ (A:12-100)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PDZ
PS50106
PDZ domain profile.
NEB1_HUMAN
504-592
1
A:12-100
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Exons
(6, 6)
Info
All Exons
Exon 1.5c (A:1-7 (gaps))
Exon 1.6 (A:8-18)
Exon 1.7 (A:18-58)
Exon 1.8 (A:58-93)
Exon 1.9 (A:93-102)
Exon 1.11 (A:103-107 (gaps))
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All Exon Boundaries
1: Boundary 1.2a/1.5c
2: Boundary 1.5c/1.6
3: Boundary 1.6/1.7
4: Boundary 1.7/1.8
5: Boundary 1.8/1.9
6: Boundary 1.9/1.11
7: Boundary 1.11/1.12
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.2a
ENST00000340694
2a
ENSE00001518247
chr7:
94536949-94537014
66
NEB1_HUMAN
-
0
0
-
-
1.5c
ENST00000340694
5c
ENSE00001379770
chr7:
94539210-94540820
1611
NEB1_HUMAN
1-465
465
1
A:1-7 (gaps)
48
1.6
ENST00000340694
6
ENSE00001793819
chr7:
94740571-94740703
133
NEB1_HUMAN
466-510
45
1
A:8-18
11
1.7
ENST00000340694
7
ENSE00001593289
chr7:
94750024-94750144
121
NEB1_HUMAN
510-550
41
1
A:18-58
41
1.8
ENST00000340694
8
ENSE00001679160
chr7:
94791179-94791283
105
NEB1_HUMAN
550-585
36
1
A:58-93
36
1.9
ENST00000340694
9
ENSE00001780046
chr7:
94827661-94827796
136
NEB1_HUMAN
585-630
46
1
A:93-102
10
1.11
ENST00000340694
11
ENSE00001628822
chr7:
94855273-94855428
156
NEB1_HUMAN
631-682
52
1
A:103-107 (gaps)
8
1.12
ENST00000340694
12
ENSE00001671576
chr7:
94876785-94876838
54
NEB1_HUMAN
683-700
18
0
-
-
1.13
ENST00000340694
13
ENSE00001714564
chr7:
94879338-94879567
230
NEB1_HUMAN
701-777
77
0
-
-
1.14
ENST00000340694
14
ENSE00001592551
chr7:
94881074-94881170
97
NEB1_HUMAN
777-809
33
0
-
-
1.15
ENST00000340694
15
ENSE00001720357
chr7:
94881271-94881442
172
NEB1_HUMAN
810-867
58
0
-
-
1.16
ENST00000340694
16
ENSE00001633288
chr7:
94897862-94898019
158
NEB1_HUMAN
867-919
53
0
-
-
1.21
ENST00000340694
21
ENSE00001039417
chr7:
94915518-94915637
120
NEB1_HUMAN
920-959
40
0
-
-
1.22
ENST00000340694
22
ENSE00001039430
chr7:
94916422-94916445
24
NEB1_HUMAN
960-967
8
0
-
-
1.23
ENST00000340694
23
ENSE00001039439
chr7:
94917848-94918030
183
NEB1_HUMAN
968-1028
61
0
-
-
1.24e
ENST00000340694
24e
ENSE00001390261
chr7:
94919403-94925725
6323
NEB1_HUMAN
1029-1098
70
0
-
-
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SCOP Domains
(1, 1)
Info
All SCOP Domains
1a: SCOP_d1wf8a1 (A:8-101)
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Protein Domains
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Organisms
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Class
:
All beta proteins
(24004)
Fold
:
PDZ domain-like
(299)
Superfamily
:
PDZ domain-like
(299)
Family
:
PDZ domain
(180)
Protein domain
:
Neurabin-i
(1)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1wf8a1
A:8-101
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CATH Domains
(1, 1)
Info
all CATH domains
1a: CATH_1wf8A00 (A:1-107)
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Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
Pdz3 Domain
(191)
Homologous Superfamily
:
[code=2.30.42.10, no name defined]
(191)
Human (Homo sapiens)
(120)
1a
1wf8A00
A:1-107
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Pfam Domains
(0, 0)
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Chain A
Asymmetric Unit 1
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