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1T34
Asym. Unit
Info
Asym.Unit (150 KB)
Biol.Unit 1 (144 KB)
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(1)
Title
:
ROTATION MECHANISM FOR TRANSMEMBRANE SIGNALING BY THE ATRIAL NATRIURETIC PEPTIDE RECEPTOR
Authors
:
H. Ogawa, Y. Qiu, C. M. Ogata, K. S. Misono
Date
:
23 Apr 04 (Deposition) - 03 Aug 04 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.95
Chains
:
Asym. Unit : A,B,H
Biol. Unit 1: A,B,H (1x)
Keywords
:
Receptor-Hormone Complex; Natriuretic Peptide Receptor; Guanylyl- Cyclase-Coupled Receptor; Signal Transduction; Rotation Mechanism, Signaling Protein, Membrane Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
H. Ogawa, Y. Qiu, C. M. Ogata, K. S. Misono
Crystal Structure Of Hormone-Bound Atrial Natriuretic Peptide Receptor Extracellular Domain: Rotation Mechanism For Transmembrane Signal Transduction
J. Biol. Chem. V. 279 28625 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 10)
Info
All Hetero Components
1a: CHLORIDE ION (CLa)
1b: CHLORIDE ION (CLb)
2a: N-ACETYL-D-GLUCOSAMINE (NAGa)
2b: N-ACETYL-D-GLUCOSAMINE (NAGb)
2c: N-ACETYL-D-GLUCOSAMINE (NAGc)
2d: N-ACETYL-D-GLUCOSAMINE (NAGd)
2e: N-ACETYL-D-GLUCOSAMINE (NAGe)
2f: N-ACETYL-D-GLUCOSAMINE (NAGf)
2g: N-ACETYL-D-GLUCOSAMINE (NAGg)
2h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CL
2
Ligand/Ion
CHLORIDE ION
2
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:13 , SER A:15 , TYR A:16 , GLY A:58 , NAG A:452
BINDING SITE FOR RESIDUE NAG A 451
02
AC2
SOFTWARE
NAG A:451
BINDING SITE FOR RESIDUE NAG A 452
03
AC3
SOFTWARE
TYR A:363 , ASN A:395 , SER A:398 , NAG A:462
BINDING SITE FOR RESIDUE NAG A 461
04
AC4
SOFTWARE
TYR A:363 , NAG A:461
BINDING SITE FOR RESIDUE NAG A 462
05
AC5
SOFTWARE
ASN B:13 , SER B:15 , TYR B:16 , GLY B:58 , NAG B:452
BINDING SITE FOR RESIDUE NAG B 451
06
AC6
SOFTWARE
NAG B:451
BINDING SITE FOR RESIDUE NAG B 452
07
AC7
SOFTWARE
TYR B:363 , ASN B:395 , SER B:398 , NAG B:462
BINDING SITE FOR RESIDUE NAG B 461
08
AC8
SOFTWARE
TYR B:363 , NAG B:461
BINDING SITE FOR RESIDUE NAG B 462
09
AC9
SOFTWARE
PRO A:10 , TRP A:18 , SER A:53 , PRO A:84 , GLY A:85 , CYS A:86
BINDING SITE FOR RESIDUE CL A 600
10
BC1
SOFTWARE
TRP B:18 , SER B:53 , PRO B:84 , GLY B:85 , CYS B:86
BINDING SITE FOR RESIDUE CL B 601
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Sorry, no Info available
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PROSITE Patterns/Profiles
(2, 3)
Info
All PROSITE Patterns/Profiles
1: ANF_RECEPTORS (A:83-100,B:83-100)
2: NATRIURETIC_PEPTIDE (H:7-23)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
ANF_RECEPTORS
PS00458
Natriuretic peptides receptors signature.
ANPRA_RAT
111-128
2
A:83-100
B:83-100
2
NATRIURETIC_PEPTIDE
PS00263
Natriuretic peptides signature.
ANF_RAT
129-145
1
H:7-23
[
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Exons
(7, 13)
Info
All Exons
Exon 1.2 (H:7-27)
Exon 2.1 (A:1-209 | B:1-209)
Exon 2.2 (A:209-275 | B:209-275 (gaps))
Exon 2.3 (A:276-313 | B:276-313)
Exon 2.4 (A:314-359 | B:314-359)
Exon 2.5 (A:359-389 | B:359-389)
Exon 2.6 (A:390-426 | B:390-425)
View:
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All Exon Boundaries
1: Boundary 1.1/1.2
2: Boundary 1.2/1.3
3: Boundary -/2.1
4: Boundary 2.1/2.2
5: Boundary 2.2/2.3
6: Boundary 2.3/2.4
7: Boundary 2.4/2.5
8: Boundary 2.5/2.6
9: Boundary 2.6/2.7
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSRNOT00000011005
1
ENSRNOE00000076704
chr5:
165074518-165074713
196
ANF_RAT
1-40
40
0
-
-
1.2
ENSRNOT00000011005
2
ENSRNOE00000077379
chr5:
165074818-165075144
327
ANF_RAT
41-149
109
1
H:7-27
21
1.3
ENSRNOT00000011005
3
ENSRNOE00000078054
chr5:
165075537-165075827
291
ANF_RAT
150-152
3
0
-
-
2.1
ENSRNOT00000020307
1
ENSRNOE00000140660
chr2:
182740242-182739164
1079
ANPRA_RAT
1-237
237
2
A:1-209
B:1-209
209
209
2.2
ENSRNOT00000020307
2
ENSRNOE00000140878
chr2:
182738316-182738117
200
ANPRA_RAT
237-303
67
2
A:209-275
B:209-275 (gaps)
67
67
2.3
ENSRNOT00000020307
3
ENSRNOE00000141093
chr2:
182737505-182737392
114
ANPRA_RAT
304-341
38
2
A:276-313
B:276-313
38
38
2.4
ENSRNOT00000020307
4
ENSRNOE00000141279
chr2:
182736964-182736829
136
ANPRA_RAT
342-387
46
2
A:314-359
B:314-359
46
46
2.5
ENSRNOT00000020307
5
ENSRNOE00000141472
chr2:
182736529-182736438
92
ANPRA_RAT
387-417
31
2
A:359-389
B:359-389
31
31
2.6
ENSRNOT00000020307
6
ENSRNOE00000141683
chr2:
182735718-182735583
136
ANPRA_RAT
418-463
46
2
A:390-426
B:390-425
37
36
2.7
ENSRNOT00000020307
7
ENSRNOE00000141882
chr2:
182735385-182735301
85
ANPRA_RAT
463-491
29
0
-
-
2.8
ENSRNOT00000020307
8
ENSRNOE00000142079
chr2:
182734081-182733961
121
ANPRA_RAT
491-531
41
0
-
-
2.9
ENSRNOT00000020307
9
ENSRNOE00000142284
chr2:
182733408-182733334
75
ANPRA_RAT
532-556
25
0
-
-
2.10
ENSRNOT00000020307
10
ENSRNOE00000142499
chr2:
182733123-182733046
78
ANPRA_RAT
557-582
26
0
-
-
2.11
ENSRNOT00000020307
11
ENSRNOE00000142704
chr2:
182732746-182732642
105
ANPRA_RAT
583-617
35
0
-
-
2.12
ENSRNOT00000020307
12
ENSRNOE00000142897
chr2:
182732401-182732330
72
ANPRA_RAT
618-641
24
0
-
-
2.13
ENSRNOT00000020307
13
ENSRNOE00000143106
chr2:
182732232-182732076
157
ANPRA_RAT
642-694
53
0
-
-
2.14
ENSRNOT00000020307
14
ENSRNOE00000143318
chr2:
182731603-182731448
156
ANPRA_RAT
694-746
53
0
-
-
2.15
ENSRNOT00000020307
15
ENSRNOE00000143536
chr2:
182731205-182731037
169
ANPRA_RAT
746-802
57
0
-
-
2.16
ENSRNOT00000020307
16
ENSRNOE00000143732
chr2:
182730181-182730035
147
ANPRA_RAT
802-851
50
0
-
-
2.17
ENSRNOT00000020307
17
ENSRNOE00000143914
chr2:
182729869-182729746
124
ANPRA_RAT
851-892
42
0
-
-
2.18
ENSRNOT00000020307
18
ENSRNOE00000144089
chr2:
182729618-182729550
69
ANPRA_RAT
893-915
23
0
-
-
2.19
ENSRNOT00000020307
19
ENSRNOE00000144261
chr2:
182729068-182728894
175
ANPRA_RAT
916-974
59
0
-
-
2.20
ENSRNOT00000020307
20
ENSRNOE00000144438
chr2:
182728721-182728623
99
ANPRA_RAT
974-1007
34
0
-
-
2.21
ENSRNOT00000020307
21
ENSRNOE00000144613
chr2:
182725718-182725627
92
ANPRA_RAT
1007-1037
31
0
-
-
2.22
ENSRNOT00000020307
22
ENSRNOE00000248673
chr2:
182725502-182724916
587
ANPRA_RAT
1038-1057
20
0
-
-
[
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]
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1t34a_ (A:)
1b: SCOP_d1t34b_ (B:)
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Protein Domains
(
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(
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Organisms
(
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(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Periplasmic binding protein-like I
(179)
Superfamily
:
Periplasmic binding protein-like I
(179)
Family
:
L-arabinose binding protein-like
(114)
Protein domain
:
Hormone binding domain of the atrial natriuretic peptide receptor
(5)
Norway rat (Rattus norvegicus) [TaxId: 10116]
(3)
1a
d1t34a_
A:
1b
d1t34b_
B:
[
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CATH Domains
(1, 4)
Info
all CATH domains
1a: CATH_1t34B02 (B:128-284,B:373-425)
1b: CATH_1t34A02 (A:128-284,A:373-425)
1c: CATH_1t34A01 (A:1-127,A:285-372)
1d: CATH_1t34B01 (B:1-127,B:285-372)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
[code=3.40.50.2300, no name defined]
(308)
Norway rat (Rattus norvegicus)
(7)
1a
1t34B02
B:128-284,B:373-425
1b
1t34A02
A:128-284,A:373-425
1c
1t34A01
A:1-127,A:285-372
1d
1t34B01
B:1-127,B:285-372
[
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Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_ANF_receptor_1t34B01 (B:22-384)
1b: PFAM_ANF_receptor_1t34B02 (B:22-384)
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(
)
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(
)
(
)
Clan
:
Periplas_BP
(97)
Family
:
ANF_receptor
(21)
Rattus norvegicus (Rat)
(13)
1a
ANF_receptor-1t34B01
B:22-384
1b
ANF_receptor-1t34B02
B:22-384
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