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1T0F
Biol. Unit 3
Info
Asym.Unit (117 KB)
Biol.Unit 1 (58 KB)
Biol.Unit 2 (57 KB)
Biol.Unit 3 (112 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE TNSA/TNSC(504-555) COMPLEX
Authors
:
D. R. Ronning, Y. Li, Z. N. Perez, P. D. Ross, A. B. Hickman, N. L. Craig, F.
Date
:
08 Apr 04 (Deposition) - 09 Nov 04 (Release) - 29 Apr 15 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
1.85
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Biol. Unit 3: A,B,C,D (1x)
Keywords
:
Protein-Protein Complex, Mixed Alpha-Beta, Dna Binding Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. R. Ronning, Y. Li, Z. N. Perez, P. D. Ross, A. B. Hickman, N. L. Craig, F. Dyda
The Carboxy-Terminal Portion Of Tnsc Activates The Tn7 Transposase Through A Specific Interaction With Tnsa.
Embo J. V. 23 2972 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 8)
Info
All Hetero Components
1a: MAGNESIUM ION (MGa)
1b: MAGNESIUM ION (MGb)
2a: MALONIC ACID (MLAa)
2b: MALONIC ACID (MLAb)
2c: MALONIC ACID (MLAc)
3a: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDa)
3b: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDb)
3c: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDc)
3d: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDd)
3e: (4S)-2-METHYL-2,4-PENTANEDIOL (MPDe)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
MG
-1
Ligand/Ion
MAGNESIUM ION
2
MLA
3
Ligand/Ion
MALONIC ACID
3
MPD
5
Ligand/Ion
(4S)-2-METHYL-2,4-PENTANEDIOL
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASP B:114 , GLN B:130 , VAL B:131 , HOH B:2030 , HOH B:2178 , HOH B:2223
BINDING SITE FOR RESIDUE MG B 1009
02
AC2
SOFTWARE
ASP A:114 , GLN A:130 , VAL A:131 , HOH A:2120 , HOH A:2211 , HOH A:2216
BINDING SITE FOR RESIDUE MG A 1010
03
AC3
SOFTWARE
PRO A:102 , VAL A:103 , ILE A:104 , ARG A:141 , LYS A:145 , HOH A:2269 , HOH A:2344 , ARG B:105
BINDING SITE FOR RESIDUE MLA A 1001
04
AC4
SOFTWARE
VAL A:182 , HOH A:2318 , GLN B:138 , TYR D:525 , ARG D:528 , HOH D:2153
BINDING SITE FOR RESIDUE MLA D 1002
05
AC5
SOFTWARE
ARG A:105 , PRO B:102 , VAL B:103 , ILE B:104 , ARG B:141 , LYS B:145 , HOH B:2019 , HOH B:2061
BINDING SITE FOR RESIDUE MLA B 1003
06
AC6
SOFTWARE
ASP A:61 , ILE A:168 , LYS A:173 , GLU A:177
BINDING SITE FOR RESIDUE MPD A 1004
07
AC7
SOFTWARE
ARG B:21 , GLY B:22 , GLN B:23 , PRO B:84 , LEU B:86 , PRO B:87 , VAL B:110
BINDING SITE FOR RESIDUE MPD B 1005
08
AC8
SOFTWARE
GLN A:194 , PRO A:197 , TYR A:221 , HOH A:2111 , HOH A:2288
BINDING SITE FOR RESIDUE MPD A 1006
09
AC9
SOFTWARE
GLN B:194
BINDING SITE FOR RESIDUE MPD B 1007
10
BC1
SOFTWARE
ARG A:21 , GLN A:23 , PRO A:84 , LEU A:86 , PRO A:87
BINDING SITE FOR RESIDUE MPD A 1008
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(, 0)
Info
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;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 4)
Info
All SCOP Domains
1a: SCOP_d1t0fa1 (A:169-268)
1b: SCOP_d1t0fb1 (B:169-268)
2a: SCOP_d1t0fa2 (A:7-168)
2b: SCOP_d1t0fb2 (B:7-168)
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)
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)
(
)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
TnsA endonuclease, C-terminal domain
(2)
Protein domain
:
TnsA endonuclease, C-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
1a
d1t0fa1
A:169-268
1b
d1t0fb1
B:169-268
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Restriction endonuclease-like
(209)
Superfamily
:
Restriction endonuclease-like
(170)
Family
:
TnsA endonuclease, N-terminal domain
(2)
Protein domain
:
TnsA endonuclease, N-terminal domain
(2)
Escherichia coli [TaxId: 562]
(2)
2a
d1t0fa2
A:7-168
2b
d1t0fb2
B:7-168
[
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]
CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1t0fA01 (A:7-168)
1b: CATH_1t0fB01 (B:7-168)
2a: CATH_1t0fA02 (A:169-267)
2b: CATH_1t0fB02 (B:169-267)
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)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Trna Endonuclease; Chain: A, domain 1
(24)
Homologous Superfamily
:
[code=3.40.1350.10, no name defined]
(24)
Escherichia coli. Organism_taxid: 562.
(1)
1a
1t0fA01
A:7-168
1b
1t0fB01
B:7-168
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Escherichia coli. Organism_taxid: 562.
(11)
2a
1t0fA02
A:169-267
2b
1t0fB02
B:169-267
[
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Pfam Domains
(3, 6)
Info
all PFAM domains
1a: PFAM_Tn7_Tnp_TnsA_C_1t0fB01 (B:167-245)
1b: PFAM_Tn7_Tnp_TnsA_C_1t0fB02 (B:167-245)
2a: PFAM_Tn7_Tnp_TnsA_N_1t0fB03 (B:74-165)
2b: PFAM_Tn7_Tnp_TnsA_N_1t0fB04 (B:74-165)
3a: PFAM_Tn7_TnsC_Int_1t0fD01 (D:508-552)
3b: PFAM_Tn7_TnsC_Int_1t0fD02 (D:508-552)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
no clan defined [family: Tn7_Tnp_TnsA_C]
(1)
Family
:
Tn7_Tnp_TnsA_C
(1)
Escherichia coli
(1)
1a
Tn7_Tnp_TnsA_C-1t0fB01
B:167-245
1b
Tn7_Tnp_TnsA_C-1t0fB02
B:167-245
Clan
:
no clan defined [family: Tn7_Tnp_TnsA_N]
(1)
Family
:
Tn7_Tnp_TnsA_N
(1)
Escherichia coli
(1)
2a
Tn7_Tnp_TnsA_N-1t0fB03
B:74-165
2b
Tn7_Tnp_TnsA_N-1t0fB04
B:74-165
Clan
:
no clan defined [family: Tn7_TnsC_Int]
(1)
Family
:
Tn7_TnsC_Int
(1)
Escherichia coli
(1)
3a
Tn7_TnsC_Int-1t0fD01
D:508-552
3b
Tn7_TnsC_Int-1t0fD02
D:508-552
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Asymmetric Unit 1
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