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1RPW
Biol. Unit 1
Info
Asym.Unit (135 KB)
Biol.Unit 1 (66 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MULTIDRUG BINDING PROTEIN QACR BOUND TO THE DIAMIDINE HEXAMIDINE
Authors
:
D. S. Murray, M. A. Schumacher, R. G. Brennan
Date
:
03 Dec 03 (Deposition) - 01 Jun 04 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Keywords
:
Qacr Hexamidine, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
D. S. Murray, M. A. Schumacher, R. G. Brennan
Crystal Structures Of Qacr-Diamidine Complexes Reveal Additional Multidrug-Binding Modes And A Novel Mechanism Of Drug Charge Neutralization.
J. Biol. Chem. V. 279 14365 2004
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: 4,4'[1,6-HEXANEDIYLBIS(OXY)]BISBEN... (DIDa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
DID
1
Ligand/Ion
4,4'[1,6-HEXANEDIYLBIS(OXY)]BISBENZENECARBOXIMIDAMIDE
2
SO4
6
Ligand/Ion
SULFATE ION
[
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Sites
(10, 10)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC7 (SOFTWARE)
04: BC1 (SOFTWARE)
05: BC2 (SOFTWARE)
06: BC3 (SOFTWARE)
07: BC6 (SOFTWARE)
08: BC7 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
LYS B:4 , HIS B:42
BINDING SITE FOR RESIDUE SO4 B 189
02
AC4
SOFTWARE
LYS A:66 , ASN C:2 , LEU C:3 , LYS C:4 , ASN C:38 , HIS C:42
BINDING SITE FOR RESIDUE SO4 C 190
03
AC7
SOFTWARE
SER B:35 , LYS B:36 , LYS D:60
BINDING SITE FOR RESIDUE SO4 B 190
04
BC1
SOFTWARE
LYS B:36 , TYR B:40 , ASN D:2 , ASP D:5 , LYS D:6
BINDING SITE FOR RESIDUE SO4 D 192
05
BC2
SOFTWARE
GLN A:64 , TYR A:91 , GLN C:64 , GLU C:90 , TYR C:91
BINDING SITE FOR RESIDUE SO4 A 189
06
BC3
SOFTWARE
THR A:24 , THR A:25 , LYS A:46
BINDING SITE FOR RESIDUE SO4 A 190
07
BC6
SOFTWARE
ASN B:2 , LEU B:3 , LYS B:4 , ASN B:38 , HIS B:42
BINDING SITE FOR RESIDUE SO4 B 191
08
BC7
SOFTWARE
LYS A:73 , HIS C:164 , GLU C:165 , GLN C:166
BINDING SITE FOR RESIDUE SO4 C 194
09
BC9
SOFTWARE
ASP B:144 , ASN B:146 , ALA B:147
BINDING SITE FOR RESIDUE SO4 B 192
10
CC3
SOFTWARE
PHE A:162 , GLU B:57 , TRP B:61 , GLN B:64 , TYR B:93 , GLU B:120 , ILE B:124 , ASN B:154 , ASN B:157 , HOH B:199 , HOH B:200
BINDING SITE FOR RESIDUE DID B 193
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
2
A:19-49
B:19-49
-
-
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1rpwa1 (A:2-72)
1b: SCOP_d1rpwb1 (B:2-72)
1c: SCOP_d1rpwc1 (C:2-72)
1d: SCOP_d1rpwd1 (D:2-72)
2a: SCOP_d1rpwa2 (A:73-187)
2b: SCOP_d1rpwb2 (B:73-187)
2c: SCOP_d1rpwc2 (C:73-187)
2d: SCOP_d1rpwd2 (D:73-187)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d1rpwa1
A:2-72
1b
d1rpwb1
B:2-72
1c
d1rpwc1
C:2-72
1d
d1rpwd1
D:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d1rpwa2
A:73-187
2b
d1rpwb2
B:73-187
2c
d1rpwc2
C:73-187
2d
d1rpwd2
D:73-187
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1rpwA01 (A:2-50)
1b: CATH_1rpwB01 (B:2-50)
1c: CATH_1rpwC01 (C:2-50)
1d: CATH_1rpwD01 (D:2-50)
2a: CATH_1rpwA02 (A:51-187)
2b: CATH_1rpwB02 (B:51-187)
2c: CATH_1rpwC02 (C:51-187)
2d: CATH_1rpwD02 (D:51-187)
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)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280.
(8)
1a
1rpwA01
A:2-50
1b
1rpwB01
B:2-50
1c
1rpwC01
C:2-50
1d
1rpwD01
D:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280.
(7)
2a
1rpwA02
A:51-187
2b
1rpwB02
B:51-187
2c
1rpwC02
C:51-187
2d
1rpwD02
D:51-187
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TetR_N_1rpwD01 (D:7-53)
1b: PFAM_TetR_N_1rpwD02 (D:7-53)
1c: PFAM_TetR_N_1rpwD03 (D:7-53)
1d: PFAM_TetR_N_1rpwD04 (D:7-53)
2a: PFAM_TetR_C_5_1rpwD05 (D:57-187)
2b: PFAM_TetR_C_5_1rpwD06 (D:57-187)
2c: PFAM_TetR_C_5_1rpwD07 (D:57-187)
2d: PFAM_TetR_C_5_1rpwD08 (D:57-187)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
TetR_N
(84)
Staphylococcus aureus
(11)
1a
TetR_N-1rpwD01
D:7-53
1b
TetR_N-1rpwD02
D:7-53
1c
TetR_N-1rpwD03
D:7-53
1d
TetR_N-1rpwD04
D:7-53
Clan
:
TetR_C
(33)
Family
:
TetR_C_5
(11)
Staphylococcus aureus
(11)
2a
TetR_C_5-1rpwD05
D:57-187
2b
TetR_C_5-1rpwD06
D:57-187
2c
TetR_C_5-1rpwD07
D:57-187
2d
TetR_C_5-1rpwD08
D:57-187
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Asym.Unit (135 KB)
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