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1R15
Biol. Unit 3
Info
Asym.Unit (335 KB)
Biol.Unit 1 (86 KB)
Biol.Unit 2 (86 KB)
Biol.Unit 3 (87 KB)
Biol.Unit 4 (86 KB)
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(1)
Title
:
APLYSIA ADP RIBOSYL CYCLASE WITH BOUND NICOTINAMIDE AND R5P
Authors
:
M. L. Love, D. M. E. Szebenyi, I. A. Kriksunov, D. J. Thiel, C. Munshi, R. Graeff, H. C. Lee, Q. Hao
Date
:
23 Sep 03 (Deposition) - 09 Mar 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.40
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,D (1x)
Biol. Unit 3: E,F (1x)
Biol. Unit 4: G,H (1x)
Keywords
:
Adp-Ribosyl Cyclase, X-Ray Crystallography, Cyclic Adp- Ribose, Naadp, Ca2+ Signalling, Hydrolase
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. L. Love, D. M. Szebenyi, I. A. Kriksunov, D. J. Thiel, C. Munshi, R. Graeff, H. C. Lee, Q. Hao
Adp-Ribosyl Cyclase; Crystal Structures Reveal A Covalent Intermediate.
Structure V. 12 477 2004
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 4)
Info
All Hetero Components
2a: NICOTINAMIDE (NCAa)
2b: NICOTINAMIDE (NCAb)
2c: NICOTINAMIDE (NCAc)
2d: NICOTINAMIDE (NCAd)
2e: NICOTINAMIDE (NCAe)
2f: NICOTINAMIDE (NCAf)
2g: NICOTINAMIDE (NCAg)
2h: NICOTINAMIDE (NCAh)
2i: NICOTINAMIDE (NCAi)
2j: NICOTINAMIDE (NCAj)
2k: NICOTINAMIDE (NCAk)
2l: NICOTINAMIDE (NCAl)
2m: NICOTINAMIDE (NCAm)
2n: NICOTINAMIDE (NCAn)
2o: NICOTINAMIDE (NCAo)
2p: NICOTINAMIDE (NCAp)
1a: (Na)
1b: (Nb)
1c: (Nc)
2d: (Nd)
2e: (Ne)
2f: (Nf)
2g: (Ng)
2h: (Nh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
N
-1
Ligand/Ion
2
NCA
4
Ligand/Ion
NICOTINAMIDE
[
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]
Sites
(6, 6)
Info
All Sites
1: AC8 (SOFTWARE)
2: BC2 (SOFTWARE)
3: BC6 (SOFTWARE)
4: BC7 (SOFTWARE)
5: CC3 (SOFTWARE)
6: CC4 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
1
AC8
SOFTWARE
TRP F:111 , ARG F:136 , PHE F:139 , TRP F:140
BINDING SITE FOR RESIDUE NCA F 469
2
BC2
SOFTWARE
VAL E:110 , TRP E:111 , TRP E:140
BINDING SITE FOR RESIDUE NCA E 459
3
BC6
SOFTWARE
GLU F:98 , ASN F:107 , N F:1179
BINDING SITE FOR RESIDUE NCA F 369
4
BC7
SOFTWARE
GLU E:98 , ASN E:107 , N E:1179
BINDING SITE FOR RESIDUE NCA E 359
5
CC3
SOFTWARE
TRP E:77 , SER E:78 , GLY E:79 , LEU E:97 , SER E:144 , SER E:173 , PHE E:174 , GLU E:179 , NCA E:359
BINDING SITE FOR RESIDUE N E 1179
6
CC4
SOFTWARE
TRP F:77 , SER F:78 , GLY F:79 , LEU F:97 , SER F:173 , PHE F:174 , GLU F:179 , NCA F:369
BINDING SITE FOR RESIDUE N F 1179
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1r15a_ (A:)
1b: SCOP_d1r15c_ (C:)
1c: SCOP_d1r15d_ (D:)
1d: SCOP_d1r15e_ (E:)
1e: SCOP_d1r15f_ (F:)
1f: SCOP_d1r15g_ (G:)
1g: SCOP_d1r15h_ (H:)
1h: SCOP_d1r15b_ (B:)
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(
)
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)
(
)
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(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha and beta proteins (a/b)
(23833)
Fold
:
Flavodoxin-like
(1057)
Superfamily
:
N-(deoxy)ribosyltransferase-like
(76)
Family
:
ADP ribosyl cyclase-like
(60)
Protein domain
:
ADP ribosyl cyclase
(42)
California sea hare (Aplysia californica) [TaxId: 6500]
(5)
1a
d1r15a_
A:
1b
d1r15c_
C:
1c
d1r15d_
D:
1d
d1r15e_
E:
1e
d1r15f_
F:
1f
d1r15g_
G:
1g
d1r15h_
H:
1h
d1r15b_
B:
[
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CATH Domains
(2, 16)
Info
all CATH domains
1a: CATH_1r15A02 (A:68-99,A:152-251)
1b: CATH_1r15E02 (E:68-99,E:152-251)
1c: CATH_1r15F02 (F:68-99,F:152-251)
1d: CATH_1r15G02 (G:68-99,G:152-251)
1e: CATH_1r15H02 (H:68-99,H:152-251)
1f: CATH_1r15B02 (B:68-99,B:152-251)
1g: CATH_1r15C02 (C:68-99,C:152-251)
1h: CATH_1r15D02 (D:68-99,D:152-251)
2a: CATH_1r15A01 (A:1-67,A:100-151)
2b: CATH_1r15B01 (B:1-67,B:100-151)
2c: CATH_1r15C01 (C:1-67,C:100-151)
2d: CATH_1r15D01 (D:1-67,D:100-151)
2e: CATH_1r15E01 (E:1-67,E:100-151)
2f: CATH_1r15F01 (F:1-67,F:100-151)
2g: CATH_1r15G01 (G:1-67,G:100-151)
2h: CATH_1r15H01 (H:1-67,H:100-151)
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)
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)
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)
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)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
3-Layer(aba) Sandwich
(12045)
Topology
:
Rossmann fold
(7312)
Homologous Superfamily
:
NAD(P)-binding Rossmann-like Domain
(1244)
California sea hare (Aplysia californica)
(9)
1a
1r15A02
A:68-99,A:152-251
1b
1r15E02
E:68-99,E:152-251
1c
1r15F02
F:68-99,F:152-251
1d
1r15G02
G:68-99,G:152-251
1e
1r15H02
H:68-99,H:152-251
1f
1r15B02
B:68-99,B:152-251
1g
1r15C02
C:68-99,C:152-251
1h
1r15D02
D:68-99,D:152-251
Class
:
Mainly Alpha
(13335)
Architecture
:
Up-down Bundle
(3216)
Topology
:
ADP Ribosyl Cyclase; Chain A, domain 1
(29)
Homologous Superfamily
:
ADP Ribosyl Cyclase; Chain A, domain 1
(29)
California sea hare (Aplysia californica)
(9)
2a
1r15A01
A:1-67,A:100-151
2b
1r15B01
B:1-67,B:100-151
2c
1r15C01
C:1-67,C:100-151
2d
1r15D01
D:1-67,D:100-151
2e
1r15E01
E:1-67,E:100-151
2f
1r15F01
F:1-67,F:100-151
2g
1r15G01
G:1-67,G:100-151
2h
1r15H01
H:1-67,H:100-151
[
close CATH info
]
Pfam Domains
(1, 8)
Info
all PFAM domains
1a: PFAM_Rib_hydrolayse_1r15H01 (H:4-248)
1b: PFAM_Rib_hydrolayse_1r15H02 (H:4-248)
1c: PFAM_Rib_hydrolayse_1r15H03 (H:4-248)
1d: PFAM_Rib_hydrolayse_1r15H04 (H:4-248)
1e: PFAM_Rib_hydrolayse_1r15H05 (H:4-248)
1f: PFAM_Rib_hydrolayse_1r15H06 (H:4-248)
1g: PFAM_Rib_hydrolayse_1r15H07 (H:4-248)
1h: PFAM_Rib_hydrolayse_1r15H08 (H:4-248)
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Clans
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)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
Nribosyltransf
(19)
Family
:
Rib_hydrolayse
(14)
Aplysia californica (California sea hare)
(3)
1a
Rib_hydrolayse-1r15H01
H:4-248
1b
Rib_hydrolayse-1r15H02
H:4-248
1c
Rib_hydrolayse-1r15H03
H:4-248
1d
Rib_hydrolayse-1r15H04
H:4-248
1e
Rib_hydrolayse-1r15H05
H:4-248
1f
Rib_hydrolayse-1r15H06
H:4-248
1g
Rib_hydrolayse-1r15H07
H:4-248
1h
Rib_hydrolayse-1r15H08
H:4-248
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Asymmetric Unit 1
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Asym.Unit (335 KB)
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