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1QVT
Biol. Unit 10
Info
Asym.Unit (139 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 10 (259 KB)
Biol.Unit 11 (260 KB)
Biol.Unit 12 (131 KB)
Biol.Unit 13 (131 KB)
Biol.Unit 14 (388 KB)
Biol.Unit 15 (195 KB)
Biol.Unit 16 (195 KB)
Biol.Unit 17 (130 KB)
Biol.Unit 18 (133 KB)
Biol.Unit 19 (68 KB)
Biol.Unit 2 (67 KB)
Biol.Unit 20 (132 KB)
Biol.Unit 21 (131 KB)
Biol.Unit 22 (132 KB)
Biol.Unit 23 (67 KB)
Biol.Unit 3 (516 KB)
Biol.Unit 4 (515 KB)
Biol.Unit 5 (260 KB)
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Biol.Unit 7 (260 KB)
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Biol.Unit 9 (259 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MULTIDRUG BINDING TRANSCRIPTIONAL REPRESSOR QACR BOUND TO THE DRUG PROFLAVINE
Authors
:
M. A. Schumacher, M. C. Miller, R. G. Brennan
Date
:
28 Aug 03 (Deposition) - 03 Aug 04 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.89
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Biol. Unit 3: A,B,D,E (4x)
Biol. Unit 4: A,B,D,E (4x)
Biol. Unit 5: A,B,D,E (2x)
Biol. Unit 6: A,B,D,E (2x)
Biol. Unit 7: A,B,D,E (2x)
Biol. Unit 8: A,B,D,E (2x)
Biol. Unit 9: A,B,D,E (2x)
Biol. Unit 10: A,B,D,E (2x)
Biol. Unit 11: A,B,D,E (2x)
Biol. Unit 12: A,B,D,E (1x)
Biol. Unit 13: A,B,D,E (1x)
Biol. Unit 14: A,B,D (4x)
Biol. Unit 15: A,B,E (2x)
Biol. Unit 16: A,B,D (2x)
Biol. Unit 17: B,D (2x)
Biol. Unit 18: A,E (2x)
Biol. Unit 19: A,E (1x)
Biol. Unit 20: A,E (2x)
Biol. Unit 21: D,E (2x)
Biol. Unit 22: A,B (2x)
Biol. Unit 23: B,D (1x)
Keywords
:
Multidrug Binding Protein, Repressor, Transcription, Qacr
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, M. C. Miller, R. G. Brennan
Structural Mechanism Of The Simultaneous Binding Of Two Drugs To A Multidrug-Binding Protein
Embo J. V. 23 2923 2004
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(2, 54)
Info
All Hetero Components
1a: PROFLAVIN (PRLa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
2y: SULFATE ION (SO4y)
2z: SULFATE ION (SO4z)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
PRL
2
Ligand/Ion
PROFLAVIN
2
SO4
52
Ligand/Ion
SULFATE ION
[
close Hetero Component info
]
Sites
(27, 27)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
26: CC8 (SOFTWARE)
27: CC9 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:2 , ASP A:5 , LYS A:6
BINDING SITE FOR RESIDUE SO4 A 200
02
AC2
SOFTWARE
LYS A:4 , TYR A:41 , HIS A:42 , HOH A:328
BINDING SITE FOR RESIDUE SO4 A 201
03
AC3
SOFTWARE
THR D:25 , TYR D:40 , THR D:45 , LYS D:46 , SO4 D:209
BINDING SITE FOR RESIDUE SO4 D 203
04
AC4
SOFTWARE
THR E:24 , THR E:25 , GLY E:26 , GLU E:27 , LYS E:36
BINDING SITE FOR RESIDUE SO4 E 204
05
AC5
SOFTWARE
LYS B:66 , SO4 B:210 , ASN D:2 , LYS D:4 , HIS D:42
BINDING SITE FOR RESIDUE SO4 D 205
06
AC6
SOFTWARE
THR D:24 , GLY D:26 , LYS D:30 , LYS E:108
BINDING SITE FOR RESIDUE SO4 D 206
07
AC7
SOFTWARE
LYS E:36 , TYR E:40 , THR E:45 , LYS E:46
BINDING SITE FOR RESIDUE SO4 E 207
08
AC8
SOFTWARE
VAL A:29 , SER A:35 , LYS A:36 , LYS E:60
BINDING SITE FOR RESIDUE SO4 A 208
09
AC9
SOFTWARE
TYR D:20 , LYS D:46 , GLU D:105 , TYR D:106 , SO4 D:203
BINDING SITE FOR RESIDUE SO4 D 209
10
BC1
SOFTWARE
LYS B:66 , ASN D:2 , LEU D:3 , ASN D:38 , HIS D:42 , SO4 D:205
BINDING SITE FOR RESIDUE SO4 B 210
11
BC2
SOFTWARE
LYS E:12 , ILE E:53 , ILE E:56 , GLU E:57
BINDING SITE FOR RESIDUE SO4 E 211
12
BC3
SOFTWARE
LYS A:36 , TYR A:40 , ASN E:2 , ASP E:5 , LYS E:6
BINDING SITE FOR RESIDUE SO4 E 212
13
BC4
SOFTWARE
LYS A:12 , ILE A:53 , ILE A:56 , GLU A:57 , LYS A:60
BINDING SITE FOR RESIDUE SO4 A 213
14
BC5
SOFTWARE
LYS E:4 , TYR E:41 , HIS E:42
BINDING SITE FOR RESIDUE SO4 E 214
15
BC6
SOFTWARE
GLN B:64 , GLU B:90 , TYR B:91 , GLN D:64 , TYR D:91
BINDING SITE FOR RESIDUE SO4 B 215
16
BC7
SOFTWARE
ASN B:2
BINDING SITE FOR RESIDUE SO4 B 216
17
BC8
SOFTWARE
THR B:24 , THR B:25 , LYS B:46
BINDING SITE FOR RESIDUE SO4 B 217
18
BC9
SOFTWARE
LEU A:3 , LYS A:4 , ASN A:38 , HIS A:42 , GLU E:13
BINDING SITE FOR RESIDUE SO4 A 218
19
CC1
SOFTWARE
ILE B:70 , LYS B:73 , HIS D:164 , GLU D:165 , TYR E:107
BINDING SITE FOR RESIDUE SO4 E 219
20
CC2
SOFTWARE
HIS E:128 , LYS E:132 , HOH E:236
BINDING SITE FOR RESIDUE SO4 E 220
21
CC3
SOFTWARE
GLU D:13 , LYS D:17 , LYS D:30 , GLU D:33 , HOH D:234
BINDING SITE FOR RESIDUE SO4 D 221
22
CC4
SOFTWARE
LYS D:173 , ASP E:144 , ALA E:147
BINDING SITE FOR RESIDUE SO4 E 222
23
CC5
SOFTWARE
HIS D:128 , LYS D:132
BINDING SITE FOR RESIDUE SO4 D 223
24
CC6
SOFTWARE
LYS A:6 , HOH A:333 , HOH A:337
BINDING SITE FOR RESIDUE SO4 A 224
25
CC7
SOFTWARE
LYS B:67 , LYS D:60 , GLU D:90 , TYR D:91
BINDING SITE FOR RESIDUE SO4 B 225
26
CC8
SOFTWARE
LYS A:132
BINDING SITE FOR RESIDUE SO4 A 226
27
CC9
SOFTWARE
GLU A:58 , TRP A:61 , THR A:89 , TYR A:93 , ILE A:99 , TYR A:103
BINDING SITE FOR RESIDUE PRL A 311
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
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PROSITE Patterns/Profiles
(1, 8)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49,D:19-49,E:19-49)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
8
A:19-49
B:19-49
D:19-49
E:19-49
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1qvta1 (A:2-72)
1b: SCOP_d1qvtb1 (B:2-72)
1c: SCOP_d1qvtd1 (D:2-72)
1d: SCOP_d1qvte1 (E:2-72)
2a: SCOP_d1qvta2 (A:73-187)
2b: SCOP_d1qvtb2 (B:73-187)
2c: SCOP_d1qvtd2 (D:73-187)
2d: SCOP_d1qvte2 (E:73-187)
View:
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Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d1qvta1
A:2-72
1b
d1qvtb1
B:2-72
1c
d1qvtd1
D:2-72
1d
d1qvte1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d1qvta2
A:73-187
2b
d1qvtb2
B:73-187
2c
d1qvtd2
D:73-187
2d
d1qvte2
E:73-187
[
close SCOP info
]
CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1qvtA01 (A:2-50)
1b: CATH_1qvtB01 (B:2-50)
1c: CATH_1qvtD01 (D:2-50)
1d: CATH_1qvtE01 (E:2-50)
2a: CATH_1qvtA02 (A:51-187)
2b: CATH_1qvtB02 (B:51-187)
2c: CATH_1qvtD02 (D:51-187)
2d: CATH_1qvtE02 (E:51-187)
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)
Architectures
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)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280.
(8)
1a
1qvtA01
A:2-50
1b
1qvtB01
B:2-50
1c
1qvtD01
D:2-50
1d
1qvtE01
E:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280.
(7)
2a
1qvtA02
A:51-187
2b
1qvtB02
B:51-187
2c
1qvtD02
D:51-187
2d
1qvtE02
E:51-187
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TetR_N_1qvtE01 (E:7-53)
1b: PFAM_TetR_N_1qvtE02 (E:7-53)
1c: PFAM_TetR_N_1qvtE03 (E:7-53)
1d: PFAM_TetR_N_1qvtE04 (E:7-53)
2a: PFAM_TetR_C_5_1qvtE05 (E:57-187)
2b: PFAM_TetR_C_5_1qvtE06 (E:57-187)
2c: PFAM_TetR_C_5_1qvtE07 (E:57-187)
2d: PFAM_TetR_C_5_1qvtE08 (E:57-187)
View:
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
TetR_N
(84)
Staphylococcus aureus
(11)
1a
TetR_N-1qvtE01
E:7-53
1b
TetR_N-1qvtE02
E:7-53
1c
TetR_N-1qvtE03
E:7-53
1d
TetR_N-1qvtE04
E:7-53
Clan
:
TetR_C
(33)
Family
:
TetR_C_5
(11)
Staphylococcus aureus
(11)
2a
TetR_C_5-1qvtE05
E:57-187
2b
TetR_C_5-1qvtE06
E:57-187
2c
TetR_C_5-1qvtE07
E:57-187
2d
TetR_C_5-1qvtE08
E:57-187
[
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Asym.Unit (139 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
Biol.Unit 10 (259 KB)
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Biol.Unit 11 (260 KB)
Header - Biol.Unit 11
Biol.Unit 12 (131 KB)
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Biol.Unit 13 (131 KB)
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Biol.Unit 14 (388 KB)
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Biol.Unit 15 (195 KB)
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Biol.Unit 16 (195 KB)
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Biol.Unit 19 (68 KB)
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Biol.Unit 2 (67 KB)
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Biol.Unit 20 (132 KB)
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Biol.Unit 21 (131 KB)
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Biol.Unit 23 (67 KB)
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Biol.Unit 3 (516 KB)
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Biol.Unit 4 (515 KB)
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Biol.Unit 6 (259 KB)
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