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1QD7
Asym. Unit
Info
Asym.Unit (34 KB)
Biol.Unit 1 (31 KB)
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(1)
Title
:
PARTIAL MODEL FOR 30S RIBOSOMAL SUBUNIT
Authors
:
W. M. Clemons Jr. , J. L. C. May, B. T. Wimberly, J. P. Mccutcheon, M. S. Capel, V. Ramakrishnan
Date
:
09 Jul 99 (Deposition) - 31 Aug 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
5.50
Chains
:
Asym. Unit : A
#
,B
#
,C,D,E,F,G,H,I,J
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J (1x)
(
#
: chains that contain no standard or modified protein/DNA/RNA residue)
Keywords
:
30S Ribosomal Subunit, Low Resolution Model, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
W. M. Clemons Jr. , J. L. May, B. T. Wimberly, J. P. Mccutcheon, M. S. Capel, V. Ramakrishnan
Structure Of A Bacterial 30S Ribosomal Subunit At 5. 5 A Resolution.
Nature V. 400 833 1999
(for further references see the
PDB file header
)
[
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]
Hetero Components
(1, 100)
Info
All Hetero Components
1a: (UNKa)
1aa: (UNKaa)
1ab: (UNKab)
1ac: (UNKac)
1ad: (UNKad)
1ae: (UNKae)
1af: (UNKaf)
1ag: (UNKag)
1ah: (UNKah)
1ai: (UNKai)
1aj: (UNKaj)
1ak: (UNKak)
1al: (UNKal)
1am: (UNKam)
1an: (UNKan)
1ao: (UNKao)
1ap: (UNKap)
1aq: (UNKaq)
1ar: (UNKar)
1as: (UNKas)
1at: (UNKat)
1au: (UNKau)
1av: (UNKav)
1aw: (UNKaw)
1ax: (UNKax)
1ay: (UNKay)
1az: (UNKaz)
1b: (UNKb)
1ba: (UNKba)
1bb: (UNKbb)
1bc: (UNKbc)
1bd: (UNKbd)
1be: (UNKbe)
1bf: (UNKbf)
1bg: (UNKbg)
1bh: (UNKbh)
1bi: (UNKbi)
1bj: (UNKbj)
1bk: (UNKbk)
1bl: (UNKbl)
1bm: (UNKbm)
1bn: (UNKbn)
1bo: (UNKbo)
1bp: (UNKbp)
1bq: (UNKbq)
1br: (UNKbr)
1bs: (UNKbs)
1bt: (UNKbt)
1bu: (UNKbu)
1bv: (UNKbv)
1bw: (UNKbw)
1bx: (UNKbx)
1by: (UNKby)
1bz: (UNKbz)
1c: (UNKc)
1ca: (UNKca)
1cb: (UNKcb)
1cc: (UNKcc)
1cd: (UNKcd)
1ce: (UNKce)
1cf: (UNKcf)
1cg: (UNKcg)
1ch: (UNKch)
1ci: (UNKci)
1cj: (UNKcj)
1ck: (UNKck)
1cl: (UNKcl)
1cm: (UNKcm)
1cn: (UNKcn)
1co: (UNKco)
1cp: (UNKcp)
1cq: (UNKcq)
1cr: (UNKcr)
1cs: (UNKcs)
1ct: (UNKct)
1cu: (UNKcu)
1cv: (UNKcv)
1d: (UNKd)
1e: (UNKe)
1f: (UNKf)
1g: (UNKg)
1h: (UNKh)
1i: (UNKi)
1j: (UNKj)
1k: (UNKk)
1l: (UNKl)
1m: (UNKm)
1n: (UNKn)
1o: (UNKo)
1p: (UNKp)
1q: (UNKq)
1r: (UNKr)
1s: (UNKs)
1t: (UNKt)
1u: (UNKu)
1v: (UNKv)
1w: (UNKw)
1x: (UNKx)
1y: (UNKy)
1z: (UNKz)
View:
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Label:
No.
Name
Count
Type
Full Name
1
UNK
100
Mod. Amino Acid
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Sites
(0, 0)
Info
All Sites
View:
Select:
Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RS17_GEOSE_002 (S15G, chain I, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RS17_GEOSE_002
*
S
16
G
RS17_GEOSE
---
---
I
S
15
G
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
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]
PROSITE Patterns/Profiles
(9, 9)
Info
All PROSITE Patterns/Profiles
1: S5_DSRBD (D:11-74)
2: RIBOSOMAL_S7 (F:20-46)
3: RIBOSOMAL_S5 (D:28-60)
4: RIBOSOMAL_S15 (H:38-68)
5: RIBOSOMAL_S6 (E:44-53,E:44-53)
6: RIBOSOMAL_S17 (I:57-69)
7: RIBOSOMAL_S4 (C:90-114)
8: S4 (C:92-152)
9: RIBOSOMAL_S8 (G:108-125,G:108-125)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
S5_DSRBD
PS50881
S5 double stranded RNA-binding domain profile.
RS5_GEOSE
11-74
1
D:11-74
2
RIBOSOMAL_S7
PS00052
Ribosomal protein S7 signature.
RS7_THET8
20-46
1
F:20-46
3
RIBOSOMAL_S5
PS00585
Ribosomal protein S5 signature.
RS5_GEOSE
28-60
1
D:28-60
4
RIBOSOMAL_S15
PS00362
Ribosomal protein S15 signature.
RS15_GEOSE
39-69
1
H:38-68
5
RIBOSOMAL_S6
PS01048
Ribosomal protein S6 signature.
RS6_THET8
44-53
1
E:44-53
RS6_THETH
44-53
1
E:44-53
6
RIBOSOMAL_S17
PS00056
Ribosomal protein S17 signature.
RS17_GEOSE
58-70
1
I:57-69
7
RIBOSOMAL_S4
PS00632
Ribosomal protein S4 signature.
RS4_GEOSE
90-114
1
C:90-114
8
S4
PS50889
S4 RNA-binding domain profile.
RS4_GEOSE
92-152
1
C:92-152
9
RIBOSOMAL_S8
PS00053
Ribosomal protein S8 signature.
RS8_THET8
108-125
1
G:108-125
RS8_THETH
108-125
1
G:108-125
[
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]
Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 8)
Info
All SCOP Domains
1a: SCOP_d1qd7c_ (C:)
1b: SCOP_d1qd7d_ (D:)
1c: SCOP_d1qd7e_ (E:)
1d: SCOP_d1qd7f_ (F:)
1e: SCOP_d1qd7g_ (G:)
1f: SCOP_d1qd7h_ (H:)
1g: SCOP_d1qd7i_ (I:)
1h: SCOP_d1qd7j_ (J:)
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Protein Domains
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)
Organisms
(
)
(
)
Class
:
Low resolution protein structures
(283)
Fold
:
Ribosome and ribosomal fragments
(154)
Superfamily
:
Ribosome and ribosomal fragments
(154)
Family
:
Small subunit
(15)
Protein domain
:
30S subunit
(13)
Thermus thermophilus [TaxId: 274]
(13)
1a
d1qd7c_
C:
1b
d1qd7d_
D:
1c
d1qd7e_
E:
1d
d1qd7f_
F:
1e
d1qd7g_
G:
1f
d1qd7h_
H:
1g
d1qd7i_
I:
1h
d1qd7j_
J:
[
close SCOP info
]
CATH Domains
(0, 0)
Info
all CATH domains
View:
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Label:
Sorry, no Info available
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Pfam Domains
(0, 0)
Info
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Sorry, no Info available
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Protein & NOT PROSITE
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Chain D
Chain E
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Chain G
Chain H
Chain I
Chain J
Asymmetric Unit 1
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Asym.Unit (34 KB)
Header - Asym.Unit
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Header - Biol.Unit 1
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