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1OCO
Asym. Unit
Info
Asym.Unit (593 KB)
Biol.Unit 1 (582 KB)
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(1)
Title
:
BOVINE HEART CYTOCHROME C OXIDASE IN CARBON MONOXIDE-BOUND STATE
Authors
:
T. Tsukihara, M. Yao
Date
:
09 Jul 98 (Deposition) - 22 Jul 99 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Y,Z (1x)
Keywords
:
Oxidoreductase (Cytochrome(C)-Oxygen), Cytochrome C Oxidase, Carbon Monoxide-Bound
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
S. Yoshikawa, K. Shinzawa-Itoh, R. Nakashima, R. Yaono, E. Yamashita, N. Inoue, M. Yao, M. J. Fei, C. P. Libeu, T. Mizushima, H. Yamaguchi, T. Tomizaki, T. Tsukihara
Redox-Coupled Crystal Structural Changes In Bovine Heart Cytochrome C Oxidase.
Science V. 280 1723 1998
(for further references see the
PDB file header
)
[
close entry info
]
Hetero Components
(6, 18)
Info
All Hetero Components
1a: CARBON MONOXIDE (CMOa)
1b: CARBON MONOXIDE (CMOb)
2a: COPPER (II) ION (CUa)
2b: COPPER (II) ION (CUb)
2c: COPPER (II) ION (CUc)
2d: COPPER (II) ION (CUd)
2e: COPPER (II) ION (CUe)
2f: COPPER (II) ION (CUf)
3a: HEME-A (HEAa)
3b: HEME-A (HEAb)
3c: HEME-A (HEAc)
3d: HEME-A (HEAd)
4a: MAGNESIUM ION (MGa)
4b: MAGNESIUM ION (MGb)
5a: SODIUM ION (NAa)
5b: SODIUM ION (NAb)
6a: ZINC ION (ZNa)
6b: ZINC ION (ZNb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CMO
2
Ligand/Ion
CARBON MONOXIDE
2
CU
6
Ligand/Ion
COPPER (II) ION
3
HEA
4
Ligand/Ion
HEME-A
4
MG
2
Ligand/Ion
MAGNESIUM ION
5
NA
2
Ligand/Ion
SODIUM ION
6
ZN
2
Ligand/Ion
ZINC ION
[
close Hetero Component info
]
Sites
(19, 19)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CXB (UNKNOWN)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291 , CMO A:520
BINDING SITE FOR RESIDUE CU A 517
02
AC2
SOFTWARE
HIS A:368 , ASP A:369 , GLU B:198
BINDING SITE FOR RESIDUE MG A 518
03
AC3
SOFTWARE
GLU A:40 , GLN A:43 , GLY A:45 , SER A:441
BINDING SITE FOR RESIDUE NA A 519
04
AC4
SOFTWARE
HIS B:161 , CYS B:196 , CYS B:200 , MET B:207 , CU B:229
BINDING SITE FOR RESIDUE CU B 228
05
AC5
SOFTWARE
CYS B:196 , GLU B:198 , CYS B:200 , HIS B:204 , CU B:228
BINDING SITE FOR RESIDUE CU B 229
06
AC6
SOFTWARE
CYS F:60 , CYS F:62 , CYS F:82 , CYS F:85
BINDING SITE FOR RESIDUE ZN F 99
07
AC7
SOFTWARE
HIS N:240 , HIS N:290 , HIS N:291 , CMO N:520
BINDING SITE FOR RESIDUE CU N 517
08
AC8
SOFTWARE
HIS N:368 , ASP N:369 , GLU O:198
BINDING SITE FOR RESIDUE MG N 518
09
AC9
SOFTWARE
GLU N:40 , GLN N:43 , GLY N:45 , SER N:441
BINDING SITE FOR RESIDUE NA N 519
10
BC1
SOFTWARE
HIS O:161 , CYS O:196 , CYS O:200 , MET O:207 , CU O:229
BINDING SITE FOR RESIDUE CU O 228
11
BC2
SOFTWARE
CYS O:196 , GLU O:198 , CYS O:200 , HIS O:204 , CU O:228
BINDING SITE FOR RESIDUE CU O 229
12
BC3
SOFTWARE
CYS S:60 , CYS S:62 , CYS S:82 , CYS S:85
BINDING SITE FOR RESIDUE ZN S 99
13
BC4
SOFTWARE
GLY A:27 , SER A:34 , ILE A:37 , ARG A:38 , TYR A:54 , HIS A:61 , ALA A:62 , MET A:65 , VAL A:70 , GLY A:125 , TRP A:126 , TYR A:371 , PHE A:377 , HIS A:378 , LEU A:381 , SER A:382 , VAL A:386 , MET A:390 , PHE A:425 , GLN A:428 , ARG A:438 , ARG A:439 , TYR A:440 , MET A:468
BINDING SITE FOR RESIDUE HEA A 515
14
BC5
SOFTWARE
TRP A:126 , VAL A:243 , TYR A:244 , HIS A:290 , HIS A:291 , THR A:309 , ILE A:312 , GLY A:317 , GLY A:352 , GLY A:355 , ILE A:356 , LEU A:358 , ALA A:359 , ASP A:364 , HIS A:368 , HIS A:376 , PHE A:377 , VAL A:380 , LEU A:381 , ARG A:438 , CMO A:520 , ILE B:72
BINDING SITE FOR RESIDUE HEA A 516
15
BC6
SOFTWARE
HIS A:240 , HIS A:290 , HIS A:291 , HEA A:516 , CU A:517
BINDING SITE FOR RESIDUE CMO A 520
16
BC7
SOFTWARE
GLY N:27 , SER N:34 , ILE N:37 , ARG N:38 , TYR N:54 , HIS N:61 , ALA N:62 , MET N:65 , VAL N:70 , GLY N:125 , TRP N:126 , TYR N:371 , PHE N:377 , HIS N:378 , LEU N:381 , SER N:382 , MET N:390 , PHE N:425 , GLN N:428 , ARG N:438 , ARG N:439 , TYR N:440 , MET N:468
BINDING SITE FOR RESIDUE HEA N 515
17
BC8
SOFTWARE
TRP N:126 , VAL N:243 , TYR N:244 , HIS N:290 , HIS N:291 , THR N:309 , ILE N:312 , THR N:316 , GLY N:317 , GLY N:352 , GLY N:355 , ILE N:356 , LEU N:358 , ALA N:359 , ASP N:364 , HIS N:368 , HIS N:376 , PHE N:377 , VAL N:380 , LEU N:381 , ARG N:438 , CMO N:520 , ILE O:72
BINDING SITE FOR RESIDUE HEA N 516
18
BC9
SOFTWARE
HIS N:240 , VAL N:243 , HIS N:291 , HEA N:516 , CU N:517
BINDING SITE FOR RESIDUE CMO N 520
19
CXB
UNKNOWN
HEA A:516 , CU A:517 , CMO A:520 , HEA N:516 , CU N:517 , CMO N:520
CARBON MONOXIDE BINDING SITE.
[
close Site info
]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
Select:
Label:
Sorry, no Info available
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(10, 20)
Info
All PROSITE Patterns/Profiles
01: COX2_TM (B:1-91,O:1-91)
02: COX1 (A:1-514,N:1-514)
03: COX3 (C:4-261,P:4-261)
04: CHCH (H:26-72,U:26-72)
05: COX5B_2 (F:1-98,S:1-98)
06: COX6A (G:55-72,T:55-72)
07: COX2_CUA (B:92-225,O:92-225)
08: COX5B_1 (F:69-91,S:69-91)
09: COX2 (B:159-207,O:159-207)
10: COX1_CUB (A:236-291,N:236-291)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
COX2_TM
PS50999
Cytochrome oxidase subunit II transmembrane region profile.
COX2_BOVIN
1-91
2
B:1-91
O:1-91
2
COX1
PS50855
Cytochrome oxidase subunit I profile.
COX1_BOVIN
1-514
2
A:1-514
N:1-514
3
COX3
PS50253
Heme-copper oxidase subunit III family profile.
COX3_BOVIN
4-261
2
C:4-261
P:4-261
4
CHCH
PS51808
Coiled coil-helix-coiled coil-helix (CHCH) domain profile.
CX6B1_BOVIN
27-73
2
H:26-72
U:26-72
5
COX5B_2
PS51359
Cytochrome c oxidase subunit Vb, zinc binding domain profile.
COX5B_BOVIN
32-129
2
F:1-98
S:1-98
6
COX6A
PS01329
Cytochrome c oxidase subunit VIa signature.
CX6A2_BOVIN
67-84
2
G:55-72
T:55-72
7
COX2_CUA
PS50857
Cytochrome oxidase subunit II copper A binding domain profile.
COX2_BOVIN
92-225
2
B:92-225
O:92-225
8
COX5B_1
PS00848
Cytochrome c oxidase subunit Vb, zinc binding region signature.
COX5B_BOVIN
100-122
2
F:69-91
S:69-91
9
COX2
PS00078
CO II and nitrous oxide reductase dinuclear copper centers signature.
COX2_BOVIN
159-207
2
B:159-207
O:159-207
10
COX1_CUB
PS00077
Heme-copper oxidase catalytic subunit, copper B binding region signature.
COX1_BOVIN
236-291
2
A:236-291
N:236-291
[
close PROSITE info
]
Exons
(11, 22)
Info
All Exons
Exon 1.2 (I:1-36 | V:1-36)
Exon 1.3 (I:37-73 | V:37-73)
Exon 2.2 (J:1-13 | W:1-13)
Exon 2.3 (J:14-42 | W:14-42)
Exon 2.4 (J:42-56 | W:42-56)
Exon 3.2 (E:1-32 | R:1-32)
Exon 3.3 (E:32-72 | R:32-72)
Exon 3.4 (E:73-109 | R:73-109)
Exon 4.1 (G:1-13 | T:1-13)
Exon 4.2 (G:13-58 | T:13-58)
Exon 4.3 (G:59-84 | T:59-84)
View:
Select:
Label:
All Exon Boundaries
01: Boundary 1.1/1.2
02: Boundary 1.2/1.3
03: Boundary 1.3/1.4
04: Boundary 2.1/2.2
05: Boundary 2.2/2.3
06: Boundary 2.3/2.4
07: Boundary 2.4/-
08: Boundary 3.1/3.2
09: Boundary 3.2/3.3
10: Boundary 3.3/3.4
11: Boundary 3.4/3.5
12: Boundary -/4.1
13: Boundary 4.1/4.2
14: Boundary 4.2/4.3
15: Boundary 4.3/-
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENSBTAT00000018778
1
ENSBTAE00000392730
chr14:
62538824-62538908
85
COX6C_BOVIN
-
0
0
-
-
1.2
ENSBTAT00000018778
2
ENSBTAE00000152930
chr14:
62539837-62539968
132
COX6C_BOVIN
1-37
37
2
I:1-36
V:1-36
36
36
1.3
ENSBTAT00000018778
3
ENSBTAE00000152932
chr14:
62540912-62541039
128
COX6C_BOVIN
38-74
37
2
I:37-73
V:37-73
37
37
1.4
ENSBTAT00000018778
4
ENSBTAE00000382779
chr14:
62548625-62548744
120
COX6C_BOVIN
-
0
0
-
-
2.1
ENSBTAT00000019808
1
ENSBTAE00000161251
chr18:
46232862-46232802
61
CX7A1_BOVIN
1-5
5
0
-
-
2.2
ENSBTAT00000019808
2
ENSBTAE00000161252
chr18:
46232104-46232018
87
CX7A1_BOVIN
6-34
29
2
J:1-13
W:1-13
13
13
2.3
ENSBTAT00000019808
3
ENSBTAE00000161253
chr18:
46231883-46231799
85
CX7A1_BOVIN
35-63
29
2
J:14-42
W:14-42
29
29
2.4
ENSBTAT00000019808
4
ENSBTAE00000161254
chr18:
46231418-46231281
138
CX7A1_BOVIN
63-80
18
2
J:42-56
W:42-56
15
15
3.1
ENSBTAT00000022949
1
ENSBTAE00000344359
chr21:
33835267-33835426
160
COX5A_BOVIN
1-36
36
0
-
-
3.2
ENSBTAT00000022949
2
ENSBTAE00000187373
chr21:
33840320-33840436
117
COX5A_BOVIN
36-75
40
2
E:1-32
R:1-32
32
32
3.3
ENSBTAT00000022949
3
ENSBTAE00000187374
chr21:
33842603-33842724
122
COX5A_BOVIN
75-115
41
2
E:32-72
R:32-72
41
41
3.4
ENSBTAT00000022949
4
ENSBTAE00000187376
chr21:
33843979-33844143
165
COX5A_BOVIN
116-152
37
2
E:73-109
R:73-109
37
37
3.5
ENSBTAT00000022949
5
ENSBTAE00000187379
chr21:
33846054-33846214
161
COX5A_BOVIN
-
0
0
-
-
4.1
ENSBTAT00000026002
1
ENSBTAE00000425992
chr25:
29305227-29305113
115
CX6A2_BOVIN
1-25
25
2
G:1-13
T:1-13
13
13
4.2
ENSBTAT00000026002
2
ENSBTAE00000211646
chr25:
29304966-29304830
137
CX6A2_BOVIN
25-70
46
2
G:13-58
T:13-58
46
46
4.3
ENSBTAT00000026002
3
ENSBTAE00000211652
chr25:
29304732-29304604
129
CX6A2_BOVIN
71-97
27
2
G:59-84
T:59-84
26
26
[
close EXON info
]
SCOP Domains
(14, 28)
Info
All SCOP Domains
01a: SCOP_d1ocoe_ (E:)
01b: SCOP_d1ocor_ (R:)
02a: SCOP_d1ocoh_ (H:)
02b: SCOP_d1ocou_ (U:)
03a: SCOP_d1ocob1 (B:91-227)
03b: SCOP_d1ocoo1 (O:91-227)
04a: SCOP_d1ocoa_ (A:)
04b: SCOP_d1ocon_ (N:)
05a: SCOP_d1ococ_ (C:)
05b: SCOP_d1ocop_ (P:)
06a: SCOP_d1ocod_ (D:)
06b: SCOP_d1ocoq_ (Q:)
07a: SCOP_d1ocog_ (G:)
07b: SCOP_d1ocot_ (T:)
08a: SCOP_d1ocoi_ (I:)
08b: SCOP_d1ocov_ (V:)
09a: SCOP_d1ocoj_ (J:)
09b: SCOP_d1ocow_ (W:)
10a: SCOP_d1ocok_ (K:)
10b: SCOP_d1ocox_ (X:)
11a: SCOP_d1ocol_ (L:)
11b: SCOP_d1ocoy_ (Y:)
12a: SCOP_d1ocom_ (M:)
12b: SCOP_d1ocoz_ (Z:)
13a: SCOP_d1ocob2 (B:1-90)
13b: SCOP_d1ocoo2 (O:1-90)
14a: SCOP_d1ocof_ (F:)
14b: SCOP_d1ocos_ (S:)
View:
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Label:
Classes
(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
alpha-alpha superhelix
(690)
Superfamily
:
Cytochrome c oxidase subunit E
(25)
Family
:
Cytochrome c oxidase subunit E
(25)
Protein domain
:
Cytochrome c oxidase subunit E
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
01a
d1ocoe_
E:
01b
d1ocor_
R:
Fold
:
Cytochrome c oxidase subunit h
(26)
Superfamily
:
Cytochrome c oxidase subunit h
(26)
Family
:
Cytochrome c oxidase subunit h
(26)
Protein domain
:
Cytochrome c oxidase subunit h
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
02a
d1ocoh_
H:
02b
d1ocou_
U:
Class
:
All beta proteins
(24004)
Fold
:
Cupredoxin-like
(545)
Superfamily
:
Cupredoxins
(543)
Family
:
Periplasmic domain of cytochrome c oxidase subunit II
(70)
Protein domain
:
Cytochrome c oxidase
(62)
Cow (Bos taurus) [TaxId: 9913]
(24)
03a
d1ocob1
B:91-227
03b
d1ocoo1
O:91-227
Class
:
Membrane and cell surface proteins and peptides
(2046)
Fold
:
Cytochrome c oxidase subunit I-like
(65)
Superfamily
:
Cytochrome c oxidase subunit I-like
(65)
Family
:
Cytochrome c oxidase subunit I-like
(65)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit I
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
04a
d1ocoa_
A:
04b
d1ocon_
N:
Fold
:
Cytochrome c oxidase subunit III-like
(29)
Superfamily
:
Cytochrome c oxidase subunit III-like
(29)
Family
:
Cytochrome c oxidase subunit III-like
(29)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit III
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
05a
d1ococ_
C:
05b
d1ocop_
P:
Fold
:
Single transmembrane helix
(568)
Superfamily
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit IV
(26)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit IV
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
06a
d1ocod_
D:
06b
d1ocoq_
Q:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
07a
d1ocog_
G:
07b
d1ocot_
T:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIc
(25)
Cow (Bos taurus) [TaxId: 9913]
(25)
08a
d1ocoi_
I:
08b
d1ocov_
V:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIa
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIa
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
09a
d1ocoj_
J:
09b
d1ocow_
W:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIb
(26)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIb
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
10a
d1ocok_
K:
10b
d1ocox_
X:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(25)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIc (aka VIIIa)
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
11a
d1ocol_
L:
11b
d1ocoy_
Y:
Superfamily
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Family
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(26)
Protein domain
:
Mitochondrial cytochrome c oxidase subunit VIIIb (aka IX)
(8)
Cow (Bos taurus) [TaxId: 9913]
(8)
12a
d1ocom_
M:
12b
d1ocoz_
Z:
Fold
:
Transmembrane helix hairpin
(84)
Superfamily
:
Cytochrome c oxidase subunit II-like, transmembrane region
(66)
Family
:
Cytochrome c oxidase subunit II-like, transmembrane region
(57)
Protein domain
:
Mitochondrial cytochrome c oxidase, subunit II
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
13a
d1ocob2
B:1-90
13b
d1ocoo2
O:1-90
Class
:
Small proteins
(3458)
Fold
:
Rubredoxin-like
(572)
Superfamily
:
Rubredoxin-like
(127)
Family
:
Cytochrome c oxidase Subunit F
(25)
Protein domain
:
Cytochrome c oxidase Subunit F
(24)
Cow (Bos taurus) [TaxId: 9913]
(24)
14a
d1ocof_
F:
14b
d1ocos_
S:
[
close SCOP info
]
CATH Domains
(15, 30)
Info
all CATH domains
01a: CATH_1ocoG00 (G:1-84)
01b: CATH_1ocoT00 (T:1-84)
02a: CATH_1ocoI00 (I:1-73)
02b: CATH_1ocoV00 (V:1-73)
03a: CATH_1ocoJ00 (J:1-56)
03b: CATH_1ocoW00 (W:1-56)
04a: CATH_1ocoK00 (K:6-54)
04b: CATH_1ocoX00 (X:6-54)
05a: CATH_1ocoL00 (L:1-47)
05b: CATH_1ocoY00 (Y:1-47)
06a: CATH_1ocoM00 (M:1-43)
06b: CATH_1ocoZ00 (Z:1-43)
07a: CATH_1ocoE00 (E:1-109)
07b: CATH_1ocoR00 (R:1-109)
08a: CATH_1ocoH00 (H:11-85)
08b: CATH_1ocoU00 (U:11-85)
09a: CATH_1ocoD00 (D:4-147)
09b: CATH_1ocoQ00 (Q:4-147)
10a: CATH_1ocoC01 (C:1-70)
10b: CATH_1ocoP01 (P:1-70)
11a: CATH_1ocoB01 (B:1-91)
11b: CATH_1ocoO01 (O:1-91)
12a: CATH_1ocoA00 (A:1-514)
12b: CATH_1ocoN00 (N:1-514)
13a: CATH_1ocoC02 (C:71-261)
13b: CATH_1ocoP02 (P:71-261)
14a: CATH_1ocoF00 (F:1-98)
14b: CATH_1ocoS00 (S:1-98)
15a: CATH_1ocoB02 (B:92-227)
15b: CATH_1ocoO02 (O:92-227)
View:
Select:
Label:
Classes
(
)
(
)
Architectures
(
)
(
)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Few Secondary Structures
(1120)
Architecture
:
Irregular
(1120)
Topology
:
Cytochrome C Oxidase; Chain G
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain G
(22)
Cattle (Bos taurus)
(15)
01a
1ocoG00
G:1-84
01b
1ocoT00
T:1-84
Topology
:
Cytochrome C Oxidase; Chain I
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain I
(22)
Cattle (Bos taurus)
(15)
02a
1ocoI00
I:1-73
02b
1ocoV00
V:1-73
Topology
:
Cytochrome C Oxidase; Chain J
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain J
(22)
Cattle (Bos taurus)
(15)
03a
1ocoJ00
J:1-56
03b
1ocoW00
W:1-56
Topology
:
Cytochrome C Oxidase; Chain K
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain K
(22)
Cattle (Bos taurus)
(15)
04a
1ocoK00
K:6-54
04b
1ocoX00
X:6-54
Topology
:
Cytochrome C Oxidase; Chain L
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain L
(22)
Cattle (Bos taurus)
(15)
05a
1ocoL00
L:1-47
05b
1ocoY00
Y:1-47
Topology
:
Cytochrome C Oxidase; Chain M
(30)
Homologous Superfamily
:
Cytochrome C Oxidase, chain M
(29)
Cattle (Bos taurus)
(15)
06a
1ocoM00
M:1-43
06b
1ocoZ00
Z:1-43
Class
:
Mainly Alpha
(13335)
Architecture
:
Alpha Horseshoe
(399)
Topology
:
Serine Threonine Protein Phosphatase 5, Tetratricopeptide repeat
(320)
Homologous Superfamily
:
[code=1.25.40.40, no name defined]
(22)
Cattle (Bos taurus)
(15)
07a
1ocoE00
E:1-109
07b
1ocoR00
R:1-109
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Cytochrome C oxidase subunit h
(22)
Cattle (Bos taurus)
(15)
08a
1ocoH00
H:11-85
08b
1ocoU00
U:11-85
Topology
:
Cytochrome C Oxidase; Chain D
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain D
(22)
Cattle (Bos taurus)
(15)
09a
1ocoD00
D:4-147
09b
1ocoQ00
Q:4-147
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.70, no name defined]
(106)
Cattle (Bos taurus)
(15)
10a
1ocoC01
C:1-70
10b
1ocoP01
P:1-70
Homologous Superfamily
:
[code=1.10.287.90, no name defined]
(33)
Cattle (Bos taurus)
(15)
11a
1ocoB01
B:1-91
11b
1ocoO01
O:1-91
Architecture
:
Up-down Bundle
(3216)
Topology
:
Cytochrome C Oxidase; Chain A
(41)
Homologous Superfamily
:
Cytochrome C Oxidase, chain A
(41)
Cattle (Bos taurus)
(15)
12a
1ocoA00
A:1-514
12b
1ocoN00
N:1-514
Topology
:
Four Helix Bundle (Hemerythrin (Met), subunit A)
(300)
Homologous Superfamily
:
[code=1.20.120.80, no name defined]
(26)
Cattle (Bos taurus)
(15)
13a
1ocoC02
C:71-261
13b
1ocoP02
P:71-261
Class
:
Mainly Beta
(13760)
Architecture
:
Sandwich
(5577)
Topology
:
Cytochrome C Oxidase; Chain F
(22)
Homologous Superfamily
:
Cytochrome C Oxidase, chain F
(22)
Cattle (Bos taurus)
(15)
14a
1ocoF00
F:1-98
14b
1ocoS00
S:1-98
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Cupredoxins - blue copper proteins
(420)
Cattle (Bos taurus)
(16)
15a
1ocoB02
B:92-227
15b
1ocoO02
O:92-227
[
close CATH info
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Pfam Domains
(14, 28)
Info
all PFAM domains
01a: PFAM_COX6B_1ocoU01 (U:18-82)
01b: PFAM_COX6B_1ocoU02 (U:18-82)
02a: PFAM_COX2_1ocoO01 (O:95-214)
02b: PFAM_COX2_1ocoO02 (O:95-214)
03a: PFAM_COX5B_1ocoS01 (S:1-98)
03b: PFAM_COX5B_1ocoS02 (S:1-98)
04a: PFAM_COX1_1ocoN01 (N:12-461)
04b: PFAM_COX1_1ocoN02 (N:12-461)
05a: PFAM_COX2_TM_1ocoO03 (O:1-83)
05b: PFAM_COX2_TM_1ocoO04 (O:1-83)
06a: PFAM_COX3_1ocoP01 (P:6-261)
06b: PFAM_COX3_1ocoP02 (P:6-261)
07a: PFAM_COX4_1ocoQ01 (Q:4-146)
07b: PFAM_COX4_1ocoQ02 (Q:4-146)
08a: PFAM_COX5A_1ocoR01 (R:1-108)
08b: PFAM_COX5A_1ocoR02 (R:1-108)
09a: PFAM_COX6A_1ocoT01 (T:1-79)
09b: PFAM_COX6A_1ocoT02 (T:1-79)
10a: PFAM_COX6C_1ocoV01 (V:1-72)
10b: PFAM_COX6C_1ocoV02 (V:1-72)
11a: PFAM_COX7B_1ocoX01 (X:6-54)
11b: PFAM_COX7B_1ocoX02 (X:6-54)
12a: PFAM_COX7C_1ocoY01 (Y:1-47)
12b: PFAM_COX7C_1ocoY02 (Y:1-47)
13a: PFAM_COX7a_1ocoW01 (W:2-56)
13b: PFAM_COX7a_1ocoW02 (W:2-56)
14a: PFAM_COX8_1ocoZ01 (Z:1-43)
14b: PFAM_COX8_1ocoZ02 (Z:1-43)
View:
Select:
Label:
Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
CHCH
(11)
Family
:
COX6B
(9)
Bos taurus (Bovine)
(9)
01a
COX6B-1ocoU01
U:18-82
01b
COX6B-1ocoU02
U:18-82
Clan
:
CU_oxidase
(192)
Family
:
COX2
(19)
Bos taurus (Bovine)
(9)
02a
COX2-1ocoO01
O:95-214
02b
COX2-1ocoO02
O:95-214
Clan
:
Rubredoxin
(46)
Family
:
COX5B
(10)
Bos taurus (Bovine)
(9)
03a
COX5B-1ocoS01
S:1-98
03b
COX5B-1ocoS02
S:1-98
Clan
:
no clan defined [family: COX1]
(19)
Family
:
COX1
(19)
Bos taurus (Bovine)
(9)
04a
COX1-1ocoN01
N:12-461
04b
COX1-1ocoN02
N:12-461
Clan
:
no clan defined [family: COX2_TM]
(16)
Family
:
COX2_TM
(16)
Bos taurus (Bovine)
(9)
05a
COX2_TM-1ocoO03
O:1-83
05b
COX2_TM-1ocoO04
O:1-83
Clan
:
no clan defined [family: COX3]
(12)
Family
:
COX3
(12)
Bos taurus (Bovine)
(9)
06a
COX3-1ocoP01
P:6-261
06b
COX3-1ocoP02
P:6-261
Clan
:
no clan defined [family: COX4]
(9)
Family
:
COX4
(9)
Bos taurus (Bovine)
(9)
07a
COX4-1ocoQ01
Q:4-146
07b
COX4-1ocoQ02
Q:4-146
Clan
:
no clan defined [family: COX5A]
(9)
Family
:
COX5A
(9)
Bos taurus (Bovine)
(9)
08a
COX5A-1ocoR01
R:1-108
08b
COX5A-1ocoR02
R:1-108
Clan
:
no clan defined [family: COX6A]
(9)
Family
:
COX6A
(9)
Bos taurus (Bovine)
(9)
09a
COX6A-1ocoT01
T:1-79
09b
COX6A-1ocoT02
T:1-79
Clan
:
no clan defined [family: COX6C]
(9)
Family
:
COX6C
(9)
Bos taurus (Bovine)
(9)
10a
COX6C-1ocoV01
V:1-72
10b
COX6C-1ocoV02
V:1-72
Clan
:
no clan defined [family: COX7B]
(9)
Family
:
COX7B
(9)
Bos taurus (Bovine)
(9)
11a
COX7B-1ocoX01
X:6-54
11b
COX7B-1ocoX02
X:6-54
Clan
:
no clan defined [family: COX7C]
(9)
Family
:
COX7C
(9)
Bos taurus (Bovine)
(9)
12a
COX7C-1ocoY01
Y:1-47
12b
COX7C-1ocoY02
Y:1-47
Clan
:
no clan defined [family: COX7a]
(9)
Family
:
COX7a
(9)
Bos taurus (Bovine)
(9)
13a
COX7a-1ocoW01
W:2-56
13b
COX7a-1ocoW02
W:2-56
Clan
:
no clan defined [family: COX8]
(9)
Family
:
COX8
(9)
Bos taurus (Bovine)
(9)
14a
COX8-1ocoZ01
Z:1-43
14b
COX8-1ocoZ02
Z:1-43
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