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1NVP
Biol. Unit 1
Info
Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
HUMAN TFIIA/TBP/DNA COMPLEX
Authors
:
M. Bleichenbacher, S. Tan, T. J. Richmond
Date
:
04 Feb 03 (Deposition) - 21 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Transcription Regulation, Dna, Complex, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Bleichenbacher, S. Tan, T. J. Richmond
Novel Interactions Between The Components Of Human And Yeast Tfiia/Tbp/Dna Complexes.
J. Mol. Biol. V. 332 783 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
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Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
1: VAR_035667 (L30V, chain B, )
View:
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Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035667
L
30
V
TF2AA_HUMAN
Unclassified
---
B
L
30
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TFIID (A:283-332)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TFIID
PS00351
Transcription factor TFIID repeat signature.
TBP_HUMAN
192-241
283-332
2
A:192-241
A:283-332
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(5, 6)
Info
All SCOP Domains
1a: SCOP_d1nvpb_ (B:)
2a: SCOP_d1nvpd1 (D:3-53)
3a: SCOP_d1nvpc_ (C:)
4a: SCOP_d1nvpd2 (D:54-99)
5a: SCOP_d1nvpa1 (A:159-252)
5b: SCOP_d1nvpa2 (A:253-338)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Transcription factor IIA (TFIIA), alpha-helical domain
(7)
Superfamily
:
Transcription factor IIA (TFIIA), alpha-helical domain
(7)
Family
:
Transcription factor IIA (TFIIA), alpha-helical domain
(7)
Protein domain
:
Large chain TOA1, N-terminal domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1nvpb_
B:
Protein domain
:
Small chain TOA2, N-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1nvpd1
D:3-53
Class
:
All beta proteins
(24004)
Fold
:
Transcription factor IIA (TFIIA), beta-barrel domain
(7)
Superfamily
:
Transcription factor IIA (TFIIA), beta-barrel domain
(7)
Family
:
Transcription factor IIA (TFIIA), beta-barrel domain
(7)
Protein domain
:
Large chain TOA1, C-terminal domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1nvpc_
C:
Protein domain
:
Small chain TOA2, C-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
4a
d1nvpd2
D:54-99
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
TATA-box binding protein-like
(70)
Family
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Protein domain
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Human (Homo sapiens) [TaxId: 9606]
(5)
5a
d1nvpa1
A:159-252
5b
d1nvpa2
A:253-338
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CATH Domains
(4, 6)
Info
all CATH domains
1a: CATH_1nvpA01 (A:159-169,A:256-337)
1b: CATH_1nvpA02 (A:170-255)
2a: CATH_1nvpB00 (B:9-51)
3a: CATH_1nvpD01 (D:3-53)
4a: CATH_1nvpC00 (C:330-376)
4b: CATH_1nvpD02 (D:54-99)
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)
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)
Topologies
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)
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)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
TATA-Binding Protein
(37)
[unclassified]
(13)
1a
1nvpA01
A:159-169,A:256-337
1b
1nvpA02
A:170-255
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.100, no name defined]
(9)
[unclassified]
(4)
2a
1nvpB00
B:9-51
Homologous Superfamily
:
[code=1.10.287.190, no name defined]
(4)
[unclassified]
(4)
3a
1nvpD01
D:3-53
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
TATA box binding Protein, subunit D; domain 2
(4)
Homologous Superfamily
:
TATA box binding Protein, subunit D, domain 2
(4)
[unclassified]
(4)
4a
1nvpC00
C:330-376
4b
1nvpD02
D:54-99
[
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Pfam Domains
(4, 6)
Info
all PFAM domains
1a: PFAM_TBP_1nvpA01 (A:250-336)
1b: PFAM_TBP_1nvpA02 (A:250-336)
2a: PFAM_TFIIA_1nvpC01 (C:330-376)
2b: PFAM_TFIIA_1nvpC02 (C:330-376)
3a: PFAM_TFIIA_gamma_C_1nvpD01 (D:51-99)
4a: PFAM_TFIIA_gamma_N_1nvpD02 (D:3-49)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TBP-like
(48)
Family
:
TBP
(22)
Homo sapiens (Human)
(3)
1a
TBP-1nvpA01
A:250-336
1b
TBP-1nvpA02
A:250-336
Clan
:
no clan defined [family: TFIIA]
(3)
Family
:
TFIIA
(3)
Homo sapiens (Human)
(1)
2a
TFIIA-1nvpC01
C:330-376
2b
TFIIA-1nvpC02
C:330-376
Clan
:
no clan defined [family: TFIIA_gamma_C]
(3)
Family
:
TFIIA_gamma_C
(3)
Homo sapiens (Human)
(1)
3a
TFIIA_gamma_C-1nvpD01
D:51-99
Clan
:
no clan defined [family: TFIIA_gamma_N]
(3)
Family
:
TFIIA_gamma_N
(3)
Homo sapiens (Human)
(1)
4a
TFIIA_gamma_N-1nvpD02
D:3-49
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