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1NVP
Asym. Unit
Info
Asym.Unit (84 KB)
Biol.Unit 1 (80 KB)
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(1)
Title
:
HUMAN TFIIA/TBP/DNA COMPLEX
Authors
:
M. Bleichenbacher, S. Tan, T. J. Richmond
Date
:
04 Feb 03 (Deposition) - 21 Oct 03 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.10
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Transcription Regulation, Dna, Complex, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. Bleichenbacher, S. Tan, T. J. Richmond
Novel Interactions Between The Components Of Human And Yeast Tfiia/Tbp/Dna Complexes.
J. Mol. Biol. V. 332 783 2003
(for further references see the
PDB file header
)
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
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Label:
Sorry, no Info available
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Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_035667 (L30V, chain B, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_035667
L
30
V
TF2AA_HUMAN
Unclassified
---
B
L
30
V
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: TFIID (A:192-241|A:283-332)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
TFIID
PS00351
Transcription factor TFIID repeat signature.
TBP_HUMAN
192-241
283-332
2
A:192-241
A:283-332
[
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Exons
(9, 9)
Info
All Exons
Exon 1.4c (A:159-166)
Exon 1.5 (A:166-195)
Exon 1.6b (A:196-226)
Exon 1.7b (A:226-282)
Exon 1.8 (A:282-314)
Exon 1.9b (A:314-338)
Exon 2.4b (D:3-24)
Exon 2.5 (D:25-59)
Exon 2.6 (D:60-99)
View:
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All Exon Boundaries
01: Boundary 1.3b/1.4c
02: Boundary 1.4c/1.5
03: Boundary 1.5/1.6b
04: Boundary 1.6b/1.7b
05: Boundary 1.7b/1.8
06: Boundary 1.8/1.9b
07: Boundary 1.9b/-
08: Boundary 2.2/2.4b
09: Boundary 2.4b/2.5
10: Boundary 2.5/2.6
11: Boundary 2.6/2.7c
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1b
ENST00000392092
1b
ENSE00001510680
chr6:
170863459-170863551
93
TBP_HUMAN
-
0
0
-
-
1.3b
ENST00000392092
3b
ENSE00001510679
chr6:
170865970-170866171
202
TBP_HUMAN
1-18
18
0
-
-
1.4c
ENST00000392092
4c
ENSE00000854357
chr6:
170870879-170871321
443
TBP_HUMAN
19-166
148
1
A:159-166
8
1.5
ENST00000392092
5
ENSE00000766152
chr6:
170873633-170873720
88
TBP_HUMAN
166-195
30
1
A:166-195
30
1.6b
ENST00000392092
6b
ENSE00000766154
chr6:
170876006-170876097
92
TBP_HUMAN
196-226
31
1
A:196-226
31
1.7b
ENST00000392092
7b
ENSE00001593404
chr6:
170878700-170878867
168
TBP_HUMAN
226-282
57
1
A:226-282
57
1.8
ENST00000392092
8
ENSE00001773146
chr6:
170880498-170880592
95
TBP_HUMAN
282-314
33
1
A:282-314
33
1.9b
ENST00000392092
9b
ENSE00001510678
chr6:
170881274-170881944
671
TBP_HUMAN
314-339
26
1
A:314-338
25
2.1d
ENST00000396063
1d
ENSE00001523727
chr15:
59949713-59949605
109
T2AG_HUMAN
-
0
0
-
-
2.2
ENST00000396063
2
ENSE00001523724
chr15:
59949232-59949014
219
T2AG_HUMAN
-
0
0
-
-
2.4b
ENST00000396063
4b
ENSE00001141539
chr15:
59944525-59944405
121
T2AG_HUMAN
1-24
24
1
D:3-24
22
2.5
ENST00000396063
5
ENSE00000942369
chr15:
59942972-59942868
105
T2AG_HUMAN
25-59
35
1
D:25-59
35
2.6
ENST00000396063
6
ENSE00000942370
chr15:
59934461-59934335
127
T2AG_HUMAN
60-102
43
1
D:60-99
40
2.7c
ENST00000396063
7c
ENSE00001523723
chr15:
59931356-59931068
289
T2AG_HUMAN
102-109
8
0
-
-
[
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]
SCOP Domains
(5, 6)
Info
All SCOP Domains
1a: SCOP_d1nvpb_ (B:)
2a: SCOP_d1nvpd1 (D:3-53)
3a: SCOP_d1nvpc_ (C:)
4a: SCOP_d1nvpd2 (D:54-99)
5a: SCOP_d1nvpa1 (A:159-252)
5b: SCOP_d1nvpa2 (A:253-338)
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(
)
(
)
Folds
(
)
(
)
Superfamilies
(
)
(
)
Families
(
)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
Transcription factor IIA (TFIIA), alpha-helical domain
(7)
Superfamily
:
Transcription factor IIA (TFIIA), alpha-helical domain
(7)
Family
:
Transcription factor IIA (TFIIA), alpha-helical domain
(7)
Protein domain
:
Large chain TOA1, N-terminal domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
1a
d1nvpb_
B:
Protein domain
:
Small chain TOA2, N-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
2a
d1nvpd1
D:3-53
Class
:
All beta proteins
(24004)
Fold
:
Transcription factor IIA (TFIIA), beta-barrel domain
(7)
Superfamily
:
Transcription factor IIA (TFIIA), beta-barrel domain
(7)
Family
:
Transcription factor IIA (TFIIA), beta-barrel domain
(7)
Protein domain
:
Large chain TOA1, C-terminal domain
(3)
Human (Homo sapiens) [TaxId: 9606]
(1)
3a
d1nvpc_
C:
Protein domain
:
Small chain TOA2, C-terminal domain
(4)
Human (Homo sapiens) [TaxId: 9606]
(1)
4a
d1nvpd2
D:54-99
Class
:
Alpha and beta proteins (a+b)
(23004)
Fold
:
TBP-like
(289)
Superfamily
:
TATA-box binding protein-like
(70)
Family
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Protein domain
:
TATA-box binding protein (TBP), C-terminal domain
(29)
Human (Homo sapiens) [TaxId: 9606]
(5)
5a
d1nvpa1
A:159-252
5b
d1nvpa2
A:253-338
[
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CATH Domains
(4, 6)
Info
all CATH domains
1a: CATH_1nvpA01 (A:159-169,A:256-337)
1b: CATH_1nvpA02 (A:170-255)
2a: CATH_1nvpB00 (B:9-51)
3a: CATH_1nvpD01 (D:3-53)
4a: CATH_1nvpC00 (C:330-376)
4b: CATH_1nvpD02 (D:54-99)
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)
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)
Topologies
(
)
(
)
Homologous Superfamilies
(
)
(
)
Organisms
(
)
(
)
Class
:
Alpha Beta
(26913)
Architecture
:
2-Layer Sandwich
(8480)
Topology
:
TATA-Binding Protein
(118)
Homologous Superfamily
:
TATA-Binding Protein
(37)
[unclassified]
(13)
1a
1nvpA01
A:159-169,A:256-337
1b
1nvpA02
A:170-255
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Helix Hairpins
(718)
Homologous Superfamily
:
[code=1.10.287.100, no name defined]
(9)
[unclassified]
(4)
2a
1nvpB00
B:9-51
Homologous Superfamily
:
[code=1.10.287.190, no name defined]
(4)
[unclassified]
(4)
3a
1nvpD01
D:3-53
Class
:
Mainly Beta
(13760)
Architecture
:
Roll
(1513)
Topology
:
TATA box binding Protein, subunit D; domain 2
(4)
Homologous Superfamily
:
TATA box binding Protein, subunit D, domain 2
(4)
[unclassified]
(4)
4a
1nvpC00
C:330-376
4b
1nvpD02
D:54-99
[
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]
Pfam Domains
(4, 6)
Info
all PFAM domains
1a: PFAM_TBP_1nvpA01 (A:250-336)
1b: PFAM_TBP_1nvpA02 (A:250-336)
2a: PFAM_TFIIA_1nvpC01 (C:330-376)
2b: PFAM_TFIIA_1nvpC02 (C:330-376)
3a: PFAM_TFIIA_gamma_C_1nvpD01 (D:51-99)
4a: PFAM_TFIIA_gamma_N_1nvpD02 (D:3-49)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
TBP-like
(48)
Family
:
TBP
(22)
Homo sapiens (Human)
(3)
1a
TBP-1nvpA01
A:250-336
1b
TBP-1nvpA02
A:250-336
Clan
:
no clan defined [family: TFIIA]
(3)
Family
:
TFIIA
(3)
Homo sapiens (Human)
(1)
2a
TFIIA-1nvpC01
C:330-376
2b
TFIIA-1nvpC02
C:330-376
Clan
:
no clan defined [family: TFIIA_gamma_C]
(3)
Family
:
TFIIA_gamma_C
(3)
Homo sapiens (Human)
(1)
3a
TFIIA_gamma_C-1nvpD01
D:51-99
Clan
:
no clan defined [family: TFIIA_gamma_N]
(3)
Family
:
TFIIA_gamma_N
(3)
Homo sapiens (Human)
(1)
4a
TFIIA_gamma_N-1nvpD02
D:3-49
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