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1NMC
Asym. Unit
Info
Asym.Unit (215 KB)
Biol.Unit 1 (208 KB)
Biol.Unit 2 (208 KB)
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(1)
Title
:
COMPLEX BETWEEN NC10 ANTI-INFLUENZA VIRUS NEURAMINIDASE SINGLE CHAIN ANTIBODY WITH A 15 RESIDUE LINKER AND INFLUENZA VIRUS NEURAMINIDASE
Authors
:
R. L. Malby, A. J. Mccoy, A. A. Kortt, P. J. Hudson, P. M. Colman
Date
:
21 Dec 97 (Deposition) - 23 Sep 98 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.50
Chains
:
Asym. Unit : A,B,C,H,L,N
Biol. Unit 1: H,L,N (2x)
Biol. Unit 2: A,B,C (2x)
Keywords
:
Complex (Single-Chain Antibody-Antigen), Hydrolase, Complex (Single- Chain Antibody-Antigen) Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
R. L. Malby, A. J. Mccoy, A. A. Kortt, P. J. Hudson, P. M. Colman
Three-Dimensional Structures Of Single-Chain Fv-Neuraminidase Complexes.
J. Mol. Biol. V. 279 901 1998
(for further references see the
PDB file header
)
[
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Hetero Components
(4, 20)
Info
All Hetero Components
1a: BETA-D-MANNOSE (BMAa)
1b: BETA-D-MANNOSE (BMAb)
2a: CALCIUM ION (CAa)
2b: CALCIUM ION (CAb)
3a: ALPHA-D-MANNOSE (MANa)
3b: ALPHA-D-MANNOSE (MANb)
3c: ALPHA-D-MANNOSE (MANc)
3d: ALPHA-D-MANNOSE (MANd)
3e: ALPHA-D-MANNOSE (MANe)
3f: ALPHA-D-MANNOSE (MANf)
3g: ALPHA-D-MANNOSE (MANg)
3h: ALPHA-D-MANNOSE (MANh)
4a: N-ACETYL-D-GLUCOSAMINE (NAGa)
4b: N-ACETYL-D-GLUCOSAMINE (NAGb)
4c: N-ACETYL-D-GLUCOSAMINE (NAGc)
4d: N-ACETYL-D-GLUCOSAMINE (NAGd)
4e: N-ACETYL-D-GLUCOSAMINE (NAGe)
4f: N-ACETYL-D-GLUCOSAMINE (NAGf)
4g: N-ACETYL-D-GLUCOSAMINE (NAGg)
4h: N-ACETYL-D-GLUCOSAMINE (NAGh)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
BMA
2
Ligand/Ion
BETA-D-MANNOSE
2
CA
2
Ligand/Ion
CALCIUM ION
3
MAN
8
Ligand/Ion
ALPHA-D-MANNOSE
4
NAG
8
Ligand/Ion
N-ACETYL-D-GLUCOSAMINE
[
close Hetero Component info
]
Sites
(20, 20)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN N:200 , ARG N:220 , LEU N:453 , GLY N:454 , GLN N:455 , NAG N:470B , HOH N:483
BINDING SITE FOR RESIDUE NAG N 469A
02
AC2
SOFTWARE
GLN N:392 , GLY N:394 , PHE N:452 , NAG N:469A , BMA N:471C , HOH N:483
BINDING SITE FOR RESIDUE NAG N 470B
03
AC3
SOFTWARE
LEU N:377 , THR N:391 , GLY N:394 , NAG N:470B , MAN N:472D , MAN N:475G , HOH N:524
BINDING SITE FOR RESIDUE BMA N 471C
04
AC4
SOFTWARE
ARG N:364 , GLU N:375 , BMA N:471C , MAN N:473E
BINDING SITE FOR RESIDUE MAN N 472D
05
AC5
SOFTWARE
ASP N:330 , LYS N:389 , PRO N:390 , MAN N:472D , MAN N:474F
BINDING SITE FOR RESIDUE MAN N 473E
06
AC6
SOFTWARE
ASP H:100B , ARG N:327 , ASN N:329 , ASP N:330 , ARG N:364 , ILE N:366 , MAN N:473E , HOH N:479 , HOH N:511
BINDING SITE FOR RESIDUE MAN N 474F
07
AC7
SOFTWARE
BMA N:471C
BINDING SITE FOR RESIDUE MAN N 475G
08
AC8
SOFTWARE
ASN N:146 , TRP N:437
BINDING SITE FOR RESIDUE NAG N 476A
09
AC9
SOFTWARE
ASP N:83 , PHE N:84 , ASN N:86
BINDING SITE FOR RESIDUE NAG N 477A
10
BC1
SOFTWARE
ASN A:200 , ARG A:220 , LEU A:453 , GLY A:454 , GLN A:455 , NAG A:470B , HOH A:483
BINDING SITE FOR RESIDUE NAG A 469A
11
BC2
SOFTWARE
GLN A:392 , GLY A:394 , PHE A:452 , NAG A:469A , BMA A:471C , HOH A:483
BINDING SITE FOR RESIDUE NAG A 470B
12
BC3
SOFTWARE
LEU A:377 , THR A:391 , GLY A:394 , NAG A:470B , MAN A:472D , MAN A:475G , HOH A:524
BINDING SITE FOR RESIDUE BMA A 471C
13
BC4
SOFTWARE
ARG A:364 , GLU A:375 , BMA A:471C , MAN A:473E
BINDING SITE FOR RESIDUE MAN A 472D
14
BC5
SOFTWARE
ASP A:330 , LYS A:389 , MAN A:472D , MAN A:474F
BINDING SITE FOR RESIDUE MAN A 473E
15
BC6
SOFTWARE
ARG A:327 , ASN A:329 , ASP A:330 , ILE A:366 , MAN A:473E , HOH A:479 , HOH A:511 , ASP B:100B
BINDING SITE FOR RESIDUE MAN A 474F
16
BC7
SOFTWARE
BMA A:471C
BINDING SITE FOR RESIDUE MAN A 475G
17
BC8
SOFTWARE
ASN A:146 , TRP A:437
BINDING SITE FOR RESIDUE NAG A 476A
18
BC9
SOFTWARE
ASP A:83 , PHE A:84 , ASN A:86
BINDING SITE FOR RESIDUE NAG A 477A
19
CC1
SOFTWARE
ASN N:294 , GLY N:297 , ASN N:347 , HOH N:543
BINDING SITE FOR RESIDUE CA N 478
20
CC2
SOFTWARE
ASN A:294 , GLY A:297 , ASN A:347 , HOH A:543
BINDING SITE FOR RESIDUE CA A 478
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(0, 0)
Info
All PROSITE Patterns/Profiles
;
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End label:
Sorry, no Info available
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(3, 6)
Info
All SCOP Domains
1a: SCOP_d1nmca_ (A:)
1b: SCOP_d1nmcn_ (N:)
2a: SCOP_d1nmcb_ (B:)
2b: SCOP_d1nmch_ (H:)
3a: SCOP_d1nmcc_ (C:)
3b: SCOP_d1nmcl_ (L:)
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Protein Domains
(
)
(
)
Organisms
(
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(
)
Class
:
All beta proteins
(24004)
Fold
:
6-bladed beta-propeller
(327)
Superfamily
:
Sialidases
(238)
Family
:
Sialidases (neuraminidases)
(178)
Protein domain
:
Influenza neuraminidase
(78)
Influenza A virus, different strains [TaxId: 11320]
(61)
1a
d1nmca_
A:
1b
d1nmcn_
N:
Fold
:
Immunoglobulin-like beta-sandwich
(7299)
Superfamily
:
Immunoglobulin
(5995)
Family
:
V set domains (antibody variable domain-like)
(1919)
Protein domain
:
Immunoglobulin heavy chain variable domain, VH
(658)
Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]
(177)
2a
d1nmcb_
B:
2b
d1nmch_
H:
Protein domain
:
Immunoglobulin light chain kappa variable domain, VL-kappa
(616)
Mouse (Mus musculus), cluster 4 [TaxId: 10090]
(211)
3a
d1nmcc_
C:
3b
d1nmcl_
L:
[
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CATH Domains
(2, 6)
Info
all CATH domains
1a: CATH_1nmcA00 (A:82-468)
1b: CATH_1nmcN00 (N:82-468)
2a: CATH_1nmcB00 (B:1-113)
2b: CATH_1nmcH00 (H:1-113)
2c: CATH_1nmcC00 (C:1-109)
2d: CATH_1nmcL00 (L:1-109)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Beta
(13760)
Architecture
:
6 Propellor
(215)
Topology
:
Neuraminidase
(215)
Homologous Superfamily
:
[code=2.120.10.10, no name defined]
(150)
Influenza a virus. Organism_taxid: 11320. Strain: n9. Variant: a/tern/australia/g70c/75.
(1)
1a
1nmcA00
A:82-468
1b
1nmcN00
N:82-468
Architecture
:
Sandwich
(5577)
Topology
:
Immunoglobulin-like
(3897)
Homologous Superfamily
:
Immunoglobulins
(2282)
Influenza a virus. Organism_taxid: 11320. Strain: n9. Variant: a/tern/australia/g70c/75.
(1)
2a
1nmcB00
B:1-113
2b
1nmcH00
H:1-113
2c
1nmcC00
C:1-109
2d
1nmcL00
L:1-109
[
close CATH info
]
Pfam Domains
(1, 2)
Info
all PFAM domains
1a: PFAM_Neur_1nmcN01 (N:82-466)
1b: PFAM_Neur_1nmcN02 (N:82-466)
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Clans
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Organisms
(
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(
)
Clan
:
Sialidase
(56)
Family
:
Neur
(42)
Influenza A virus (strain A/Tern/Australia/G70C/1975 H11N9)
(23)
1a
Neur-1nmcN01
N:82-466
1b
Neur-1nmcN02
N:82-466
[
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]
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Hetero
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Protein & NOT PROSITE
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Chain C
Chain H
Chain L
Chain N
Asymmetric Unit 1
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