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1ML5
Asym. Unit
Info
Asym.Unit (231 KB)
Biol.Unit 1 (219 KB)
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Title
:
STRUCTURE OF THE E. COLI RIBOSOMAL TERMINATION COMPLEX WITH RELEASE FACTOR 2
Authors
:
B. P. Klaholz, T. Pape, A. V. Zavialov, A. G. Myasnikov, E. V. Orlova, B. Vestergaard, M. Ehrenberg, M. Van Heel
Date
:
30 Aug 02 (Deposition) - 14 Jan 03 (Release) - 13 Jul 11 (Revision)
Method
:
ELECTRON MICROSCOPY
Resolution
:
14.00
Chains
:
Asym. Unit : A,B,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Z,a,b,c,d,e,f,g,h,l,m,n,o,p,q,r,s,t,u,v,w,x
Biol. Unit 1: A,B,C,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,Z,a,b,c,d,e,f,g,h,l,m,n,o,p,q,r,s,t,u,v,w,x (1x)
Keywords
:
E. Coli, Ribosome, Termination Of Protein Synthesis, Release Factor, Cryo-Eletron Microscopy, Angular Reconstitution
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
B. P. Klaholz, T. Pape, A. V. Zavialov, A. G. Myasnikov, E. V. Orlova, B. Vestergaard, M. Ehrenberg, M. Van Heel
Structure Of The Escherichia Coli Ribosomal Termination Complex With Release Factor 2
Nature V. 421 90 2003
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Hetero Components
(11, 14)
Info
All Hetero Components
01a: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAa)
02a: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGa)
03a: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCa)
03b: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCb)
04a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
05a: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGa)
06a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
06b: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ub)
07a: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Ga)
08a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
09a: O2'-METHYLGUANOSINE-5'-MONOPHOSPHA... (OMGa)
10a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
10b: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUb)
11a: WYBUTOSINE (YGa)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1MA
1
Mod. Nucleotide
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2
2MG
1
Mod. Nucleotide
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3
5MC
2
Mod. Nucleotide
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
4
5MU
1
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
5
7MG
1
Mod. Nucleotide
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
6
H2U
2
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
7
M2G
1
Mod. Nucleotide
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
8
OMC
1
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
9
OMG
1
Mod. Nucleotide
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
10
PSU
2
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
11
YG
1
Mod. Residue
WYBUTOSINE
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Sites
(0, 0)
Info
All Sites
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Label:
Sorry, no Info available
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SAPs(SNPs)/Variants
(1, 1)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_RF2_ECOLI_001 (T246A, chain Z, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_RF2_ECOLI_001
*
T
246
A
RF2_ECOLI
---
---
Z
T
246
A
* ID not provided by source
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
[
close SNP/Variant info
]
PROSITE Patterns/Profiles
(26, 26)
Info
All PROSITE Patterns/Profiles
01: RIBOSOMAL_S13_2 (P:4-112)
02: S5_DSRBD (H:6-69)
03: RIBOSOMAL_S2_1 (E:7-18)
04: RIBOSOMAL_L24E (r:8-25)
05: RIBOSOMAL_S14 (Q:23-45)
06: RIBOSOMAL_S5 (H:23-55)
07: RIBOSOMAL_S10 (M:27-42)
08: RIBOSOMAL_S18 (U:32-55)
09: KH_TYPE_2 (F:39-107)
10: RIBOSOMAL_S15 (R:39-69)
11: RIBOSOMAL_S12 (O:46-53)
12: RIBOSOMAL_S6 (I:44-53)
13: RIBOSOMAL_S19 (V:53-77)
14: RIBOSOMAL_S17 (T:54-66)
15: RIBOSOMAL_S9 (L:67-85)
16: RIBOSOMAL_L22 (s:83-107)
17: RIBOSOMAL_S13_1 (P:88-101)
18: RIBOSOMAL_S11 (N:95-117)
19: RIBOSOMAL_S4 (G:97-121)
20: S4 (G:99-161)
21: RIBOSOMAL_L1E (f:103-120)
22: RIBOSOMAL_S8 (K:108-125)
23: RIBOSOMAL_S3 (F:163-197)
24: RIBOSOMAL_L3 (e:193-216)
25: RIBOSOMAL_L2 (d:222-233)
26: RF_PROK_I (Z:245-261)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S13_2
PS50159
Ribosomal protein S13 family profile.
RS13_THET8
4-112
1
P:4-112
2
S5_DSRBD
PS50881
S5 double stranded RNA-binding domain profile.
RS5_THET8
6-69
1
H:6-69
3
RIBOSOMAL_S2_1
PS00962
Ribosomal protein S2 signature 1.
RS2_THET8
7-18
1
E:7-18
4
RIBOSOMAL_L24E
PS01073
Ribosomal protein L24e signature.
RL24E_HALMA
9-26
1
r:8-25
5
RIBOSOMAL_S14
PS00527
Ribosomal protein S14 signature.
RS14Z_THET8
23-45
1
Q:23-45
6
RIBOSOMAL_S5
PS00585
Ribosomal protein S5 signature.
RS5_THET8
23-55
1
H:23-55
7
RIBOSOMAL_S10
PS00361
Ribosomal protein S10 signature.
RS10_THET8
27-42
1
M:27-42
8
RIBOSOMAL_S18
PS00057
Ribosomal protein S18 signature.
RS18_THET8
32-55
1
U:32-55
9
KH_TYPE_2
PS50823
Type-2 KH domain profile.
RS3_THET8
39-107
1
F:39-107
10
RIBOSOMAL_S15
PS00362
Ribosomal protein S15 signature.
RS15_THET8
39-69
1
R:39-69
11
RIBOSOMAL_S12
PS00055
Ribosomal protein S12 signature.
RS12_THET8
43-50
1
O:46-53
12
RIBOSOMAL_S6
PS01048
Ribosomal protein S6 signature.
RS6_THET8
44-53
1
I:44-53
13
RIBOSOMAL_S19
PS00323
Ribosomal protein S19 signature.
RS19_THET8
53-77
1
V:53-77
14
RIBOSOMAL_S17
PS00056
Ribosomal protein S17 signature.
RS17_THET8
54-66
1
T:54-66
15
RIBOSOMAL_S9
PS00360
Ribosomal protein S9 signature.
RS9_THET8
67-85
1
L:67-85
16
RIBOSOMAL_L22
PS00464
Ribosomal protein L22 signature.
RL22_THET8
83-107
1
s:83-107
17
RIBOSOMAL_S13_1
PS00646
Ribosomal protein S13 signature.
RS13_THET8
88-101
1
P:88-101
18
RIBOSOMAL_S11
PS00054
Ribosomal protein S11 signature.
RS11_THET8
95-117
1
N:95-117
19
RIBOSOMAL_S4
PS00632
Ribosomal protein S4 signature.
RS4_THET8
97-121
1
G:97-121
20
S4
PS50889
S4 RNA-binding domain profile.
RS4_THET8
99-161
1
G:99-161
21
RIBOSOMAL_L1E
PS00939
Ribosomal protein L1e signature.
RL4_HALMA
103-129
1
f:103-120
22
RIBOSOMAL_S8
PS00053
Ribosomal protein S8 signature.
RS8_THET8
108-125
1
K:108-125
23
RIBOSOMAL_S3
PS00548
Ribosomal protein S3 signature.
RS3_THET8
163-197
1
F:163-197
24
RIBOSOMAL_L3
PS00474
Ribosomal protein L3 signature.
RL3_HALMA
195-218
1
e:193-216
25
RIBOSOMAL_L2
PS00467
Ribosomal protein L2 signature.
RL2_GEOSE
218-229
1
d:222-233
26
RF_PROK_I
PS00745
Prokaryotic-type class I peptide chain release factors signature.
RF2_ECOLI
245-261
1
Z:245-261
[
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 22)
Info
All SCOP Domains
1a: SCOP_d1ml5c_ (c:)
1b: SCOP_d1ml5e_ (E:)
1c: SCOP_d1ml5f_ (F:)
1d: SCOP_d1ml5g_ (G:)
1e: SCOP_d1ml5h_ (H:)
1f: SCOP_d1ml5i_ (I:)
1g: SCOP_d1ml5j_ (J:)
1h: SCOP_d1ml5k_ (K:)
1i: SCOP_d1ml5l_ (L:)
1j: SCOP_d1ml5m_ (M:)
1k: SCOP_d1ml5n_ (N:)
1l: SCOP_d1ml5o_ (O:)
1m: SCOP_d1ml5p_ (P:)
1n: SCOP_d1ml5q_ (Q:)
1o: SCOP_d1ml5r_ (R:)
1p: SCOP_d1ml5s_ (S:)
1q: SCOP_d1ml5t_ (T:)
1r: SCOP_d1ml5u_ (U:)
1s: SCOP_d1ml5v_ (V:)
1t: SCOP_d1ml5w_ (W:)
1u: SCOP_d1ml5x_ (X:)
1v: SCOP_d1ml5z_ (Z:)
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Protein Domains
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(
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Organisms
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(
)
Class
:
Low resolution protein structures
(283)
Fold
:
Ribosome and ribosomal fragments
(154)
Superfamily
:
Ribosome and ribosomal fragments
(154)
Family
:
Ribosome complexes
(103)
Protein domain
:
70S ribosome functional complex
(103)
Escherichia coli [TaxId: 562]
(72)
1a
d1ml5c_
c:
1b
d1ml5e_
E:
1c
d1ml5f_
F:
1d
d1ml5g_
G:
1e
d1ml5h_
H:
1f
d1ml5i_
I:
1g
d1ml5j_
J:
1h
d1ml5k_
K:
1i
d1ml5l_
L:
1j
d1ml5m_
M:
1k
d1ml5n_
N:
1l
d1ml5o_
O:
1m
d1ml5p_
P:
1n
d1ml5q_
Q:
1o
d1ml5r_
R:
1p
d1ml5s_
S:
1q
d1ml5t_
T:
1r
d1ml5u_
U:
1s
d1ml5v_
V:
1t
d1ml5w_
W:
1u
d1ml5x_
X:
1v
d1ml5z_
Z:
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CATH Domains
(0, 0)
Info
all CATH domains
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Pfam Domains
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Asym.Unit (231 KB)
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