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Asym. Unit
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Asym.Unit (63 KB)
Biol.Unit 1 (57 KB)
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(1)
Title
:
INHIBITED FRAGMENT OF ETS-1 AND PAIRED DOMAIN OF PAX5 BOUND TO DNA
Authors
:
C. W. Garvie, M. A. Pufall, B. J. Graves, C. Wolberger
Date
:
07 Aug 02 (Deposition) - 11 Dec 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,B,C,D (1x)
Keywords
:
Transcription Factor, Ternary Complex, X-Ray Diffraction, Autoinhibition, Ets Domain, Paired Domain, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
C. W. Garvie, M. A. Pufall, B. J. Graves, C. Wolberger
Structural Analysis Of The Autoinhibition Of Ets-1 And Its Role In Protein Partnerships
J. Biol. Chem. V. 277 45529 2002
(for further references see the
PDB file header
)
[
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Hetero Components
(0, 0)
Info
All Hetero Components
View:
Select:
Label:
Sorry, no Info available
[
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]
Sites
(0, 0)
Info
All Sites
View:
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Label:
Sorry, no Info available
[
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]
SAPs(SNPs)/Variants
(9, 9)
Info
(mutated residues are not available)
All SNPs/Variants
1: VAR_070672 (G24R, chain A, )
2: VAR_070673 (V26G, chain A, )
3: VAR_070674 (P34Q, chain A, )
4: VAR_070675 (D53V, chain A, )
5: VAR_070676 (R59G, chain A, )
6: VAR_070677 (S66N, chain A, )
7: VAR_070678 (T75R, chain A, )
8: VAR_070679 (P80R, chain A, )
9: VAR_070680 (I139T, chain A, )
View:
Select:
Label:
dbSNP
PDB
No.
Source
Variant ID
Variant
UniProt ID
Status
ID
Chain
Variant
1
UniProt
VAR_070672
G
24
R
PAX5_HUMAN
Polymorphism
---
A
G
24
R
2
UniProt
VAR_070673
V
26
G
PAX5_HUMAN
Polymorphism
---
A
V
26
G
3
UniProt
VAR_070674
P
34
Q
PAX5_HUMAN
Polymorphism
---
A
P
34
Q
4
UniProt
VAR_070675
D
53
V
PAX5_HUMAN
Polymorphism
---
A
D
53
V
5
UniProt
VAR_070676
R
59
G
PAX5_HUMAN
Polymorphism
---
A
R
59
G
6
UniProt
VAR_070677
S
66
N
PAX5_HUMAN
Polymorphism
---
A
S
66
N
7
UniProt
VAR_070678
T
75
R
PAX5_HUMAN
Polymorphism
---
A
T
75
R
8
UniProt
VAR_070679
P
80
R
PAX5_HUMAN
Polymorphism
---
A
P
80
R
9
UniProt
VAR_070680
I
139
T
PAX5_HUMAN
Polymorphism
---
A
I
139
T
SNP/SAP Summary Statistics
(UniProtKB/Swiss-Prot)
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PROSITE Patterns/Profiles
(4, 4)
Info
All PROSITE Patterns/Profiles
1: PAIRED_1 (A:50-66)
2: ETS_DOMAIN_3 (B:335-415)
3: ETS_DOMAIN_1 (B:337-345)
4: ETS_DOMAIN_2 (B:381-396)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
PAIRED_1
PS00034
Paired domain signature.
PAX5_HUMAN
50-66
1
A:50-66
2
ETS_DOMAIN_3
PS50061
Ets-domain profile.
ETS1_MOUSE
335-415
1
B:335-415
3
ETS_DOMAIN_1
PS00345
Ets-domain signature 1.
ETS1_MOUSE
337-345
1
B:337-345
4
ETS_DOMAIN_2
PS00346
Ets-domain signature 2.
ETS1_MOUSE
381-396
1
B:381-396
[
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Exons
(3, 3)
Info
All Exons
Exon 1.3 (A:19-71)
Exon 1.4 (A:71-137)
Exon 1.5 (A:137-142)
View:
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All Exon Boundaries
1: Boundary 1.1a/1.3
2: Boundary 1.3/1.4
3: Boundary 1.4/1.5
4: Boundary 1.5/1.6b
View:
Label:
Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1a
ENST00000358127
1a
ENSE00001927054
chr9:
37034103-37033983
121
PAX5_HUMAN
1-16
16
0
-
-
1.3
ENST00000358127
3
ENSE00001700848
chr9:
37020798-37020633
166
PAX5_HUMAN
16-71
56
1
A:19-71
53
1.4
ENST00000358127
4
ENSE00001800669
chr9:
37015191-37014994
198
PAX5_HUMAN
71-137
67
1
A:71-137
67
1.5
ENST00000358127
5
ENSE00001662228
chr9:
37006534-37006470
65
PAX5_HUMAN
137-159
23
1
A:137-142
6
1.6b
ENST00000358127
6b
ENSE00001148776
chr9:
37002773-37002645
129
PAX5_HUMAN
159-202
44
0
-
-
1.7a
ENST00000358127
7a
ENSE00001148771
chr9:
36966721-36966546
176
PAX5_HUMAN
202-260
59
0
-
-
1.11a
ENST00000358127
11a
ENSE00000928305
chr9:
36923481-36923352
130
PAX5_HUMAN
261-304
44
0
-
-
1.12
ENST00000358127
12
ENSE00001636100
chr9:
36882102-36882001
102
PAX5_HUMAN
304-338
35
0
-
-
1.13
ENST00000358127
13
ENSE00001754297
chr9:
36846926-36846840
87
PAX5_HUMAN
338-367
30
0
-
-
1.14d
ENST00000358127
14d
ENSE00001860138
chr9:
36840633-36833272
7362
PAX5_HUMAN
367-391
25
0
-
-
[
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]
SCOP Domains
(2, 3)
Info
All SCOP Domains
1a: SCOP_d1mdma1 (A:19-81)
1b: SCOP_d1mdma2 (A:82-142)
2a: SCOP_d1mdmb_ (B:)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Paired domain
(4)
Protein domain
:
Pax-5
(2)
Human (Homo sapiens) [TaxId: 9606]
(2)
1a
d1mdma1
A:19-81
1b
d1mdma2
A:82-142
Superfamily
:
Winged helix DNA-binding domain
(576)
Family
:
ets domain
(23)
Protein domain
:
ETS-1 transcription factor, residues 331-440
(9)
Mouse (Mus musculus) [TaxId: 10090]
(6)
2a
d1mdmb_
B:
[
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CATH Domains
(1, 3)
Info
all CATH domains
1a: CATH_1mdmA01 (A:19-84)
1b: CATH_1mdmB00 (B:309-437)
1c: CATH_1mdmA02 (A:85-139)
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)
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(
)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
[unclassified]
(77)
1a
1mdmA01
A:19-84
1b
1mdmB00
B:309-437
1c
1mdmA02
A:85-139
[
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]
Pfam Domains
(2, 2)
Info
all PFAM domains
1a: PFAM_Ets_1mdmB01 (B:334-417)
2a: PFAM_PAX_1mdmA01 (A:19-140)
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Clans
(
)
(
)
Families
(
)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
Ets
(14)
Mus musculus (Mouse)
(8)
1a
Ets-1mdmB01
B:334-417
Family
:
PAX
(4)
Homo sapiens (Human)
(3)
2a
PAX-1mdmA01
A:19-140
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