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1JTY
Biol. Unit 2
Info
Asym.Unit (136 KB)
Biol.Unit 1 (67 KB)
Biol.Unit 2 (65 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MULTIDRUG BINDING TRANSCRIPTIONAL REGULATOR QACR BOUND TO ETHIDIUM
Authors
:
M. A. Schumacher, M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, R. G. Brennan
Date
:
22 Aug 01 (Deposition) - 12 Dec 01 (Release) - 30 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.97
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Multidrug Binding, Multidrug Recognition Mechanism, Cationic Lipophilic Drugs, Qacr, Qaca, Repressor, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, R. G. Brennan
Structural Mechanisms Of Qacr Induction And Multidrug Recognition.
Science V. 294 2158 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(1, 7)
Info
All Hetero Components
1a: ETHIDIUM (ETa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
ET
-1
Ligand/Ion
ETHIDIUM
2
SO4
7
Ligand/Ion
SULFATE ION
[
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]
Sites
(11, 11)
Info
All Sites
01: AC3 (SOFTWARE)
02: AC4 (SOFTWARE)
03: AC5 (SOFTWARE)
04: AC7 (SOFTWARE)
05: AC8 (SOFTWARE)
06: AC9 (SOFTWARE)
07: BC2 (SOFTWARE)
08: BC3 (SOFTWARE)
09: BC5 (SOFTWARE)
10: BC8 (SOFTWARE)
11: BC9 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC3
SOFTWARE
TYR E:20 , LYS E:46 , GLU E:47 , GLU E:105 , TYR E:106
BINDING SITE FOR RESIDUE SO4 E 899
02
AC4
SOFTWARE
THR D:24 , GLY D:26 , GLU D:27
BINDING SITE FOR RESIDUE SO4 D 195
03
AC5
SOFTWARE
LYS E:36 , TYR E:40 , THR E:45 , LYS E:46 , GLU E:47
BINDING SITE FOR RESIDUE SO4 E 900
04
AC7
SOFTWARE
ASN D:2 , ASP D:5 , LYS D:6
BINDING SITE FOR RESIDUE SO4 D 999
05
AC8
SOFTWARE
HIS B:128 , LYS B:132 , TYR D:41
BINDING SITE FOR RESIDUE SO4 B 195
06
AC9
SOFTWARE
LYS E:12 , ILE E:56 , GLU E:57 , LYS E:60
BINDING SITE FOR RESIDUE SO4 E 399
07
BC2
SOFTWARE
LYS E:4 , HIS E:42
BINDING SITE FOR RESIDUE SO4 E 901
08
BC3
SOFTWARE
LYS B:60 , TYR B:91 , LYS D:67
BINDING SITE FOR RESIDUE SO4 B 199
09
BC5
SOFTWARE
GLN B:64 , LYS B:67 , TYR B:91 , GLU D:90 , TYR D:91
BINDING SITE FOR RESIDUE SO4 B 1000
10
BC8
SOFTWARE
HIS E:128 , LYS E:132 , HOH E:913
BINDING SITE FOR RESIDUE SO4 E 902
11
BC9
SOFTWARE
SER A:35 , LYS A:36 , LYS E:60 , TYR E:91
BINDING SITE FOR RESIDUE SO4 A 802
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (D:19-49,E:19-49)
;
View:
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Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
2
-
-
D:19-49
E:19-49
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1jtya1 (A:2-72)
1b: SCOP_d1jtyb1 (B:2-72)
1c: SCOP_d1jtyd1 (D:2-72)
1d: SCOP_d1jtye1 (E:2-72)
2a: SCOP_d1jtya2 (A:73-187)
2b: SCOP_d1jtyb2 (B:73-187)
2c: SCOP_d1jtyd2 (D:73-187)
2d: SCOP_d1jtye2 (E:73-187)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d1jtya1
A:2-72
1b
d1jtyb1
B:2-72
1c
d1jtyd1
D:2-72
1d
d1jtye1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d1jtya2
A:73-187
2b
d1jtyb2
B:73-187
2c
d1jtyd2
D:73-187
2d
d1jtye2
E:73-187
[
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1jtyA01 (A:2-50)
1b: CATH_1jtyB01 (B:2-50)
1c: CATH_1jtyD01 (D:2-50)
1d: CATH_1jtyE01 (E:2-50)
2a: CATH_1jtyA02 (A:51-187)
2b: CATH_1jtyB02 (B:51-187)
2c: CATH_1jtyD02 (D:51-187)
2d: CATH_1jtyE02 (E:51-187)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280.
(6)
1a
1jtyA01
A:2-50
1b
1jtyB01
B:2-50
1c
1jtyD01
D:2-50
1d
1jtyE01
E:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280.
(6)
2a
1jtyA02
A:51-187
2b
1jtyB02
B:51-187
2c
1jtyD02
D:51-187
2d
1jtyE02
E:51-187
[
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]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TetR_N_1jtyE01 (E:7-53)
1b: PFAM_TetR_N_1jtyE02 (E:7-53)
1c: PFAM_TetR_N_1jtyE03 (E:7-53)
1d: PFAM_TetR_N_1jtyE04 (E:7-53)
2a: PFAM_TetR_C_5_1jtyE05 (E:57-187)
2b: PFAM_TetR_C_5_1jtyE06 (E:57-187)
2c: PFAM_TetR_C_5_1jtyE07 (E:57-187)
2d: PFAM_TetR_C_5_1jtyE08 (E:57-187)
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Clans
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)
(
)
Families
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)
(
)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
TetR_N
(84)
Staphylococcus aureus
(11)
1a
TetR_N-1jtyE01
E:7-53
1b
TetR_N-1jtyE02
E:7-53
1c
TetR_N-1jtyE03
E:7-53
1d
TetR_N-1jtyE04
E:7-53
Clan
:
TetR_C
(33)
Family
:
TetR_C_5
(11)
Staphylococcus aureus
(11)
2a
TetR_C_5-1jtyE05
E:57-187
2b
TetR_C_5-1jtyE06
E:57-187
2c
TetR_C_5-1jtyE07
E:57-187
2d
TetR_C_5-1jtyE08
E:57-187
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Asym.Unit (136 KB)
Header - Asym.Unit
Biol.Unit 1 (67 KB)
Header - Biol.Unit 1
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Header - Biol.Unit 2
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