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1JTX
Asym. Unit
Info
Asym.Unit (138 KB)
Biol.Unit 1 (68 KB)
Biol.Unit 2 (66 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE MULTIDRUG BINDING TRANSCRIPTIONAL REGULATOR QACR BOUND TO CRYSTAL VIOLET
Authors
:
M. A. Schumacher, M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, R. G. Brennan
Date
:
22 Aug 01 (Deposition) - 07 Dec 01 (Release) - 02 Jun 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.85
Chains
:
Asym. Unit : A,B,D,E
Biol. Unit 1: A,B (1x)
Biol. Unit 2: D,E (1x)
Keywords
:
Multidrug Binding, Repressor, S. Aureus, Qaca, Qacr, Multidrug Recognition, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, R. G. Brennan
Structural Mechanisms Of Qacr Induction And Multidrug Recognition.
Science V. 294 2158 2001
(for further references see the
PDB file header
)
[
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Hetero Components
(2, 25)
Info
All Hetero Components
1a: CRYSTAL VIOLET (CVIa)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
2e: SULFATE ION (SO4e)
2f: SULFATE ION (SO4f)
2g: SULFATE ION (SO4g)
2h: SULFATE ION (SO4h)
2i: SULFATE ION (SO4i)
2j: SULFATE ION (SO4j)
2k: SULFATE ION (SO4k)
2l: SULFATE ION (SO4l)
2m: SULFATE ION (SO4m)
2n: SULFATE ION (SO4n)
2o: SULFATE ION (SO4o)
2p: SULFATE ION (SO4p)
2q: SULFATE ION (SO4q)
2r: SULFATE ION (SO4r)
2s: SULFATE ION (SO4s)
2t: SULFATE ION (SO4t)
2u: SULFATE ION (SO4u)
2v: SULFATE ION (SO4v)
2w: SULFATE ION (SO4w)
2x: SULFATE ION (SO4x)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
CVI
1
Ligand/Ion
CRYSTAL VIOLET
2
SO4
24
Ligand/Ion
SULFATE ION
[
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Sites
(25, 25)
Info
All Sites
01: AC1 (SOFTWARE)
02: AC2 (SOFTWARE)
03: AC3 (SOFTWARE)
04: AC4 (SOFTWARE)
05: AC5 (SOFTWARE)
06: AC6 (SOFTWARE)
07: AC7 (SOFTWARE)
08: AC8 (SOFTWARE)
09: AC9 (SOFTWARE)
10: BC1 (SOFTWARE)
11: BC2 (SOFTWARE)
12: BC3 (SOFTWARE)
13: BC4 (SOFTWARE)
14: BC5 (SOFTWARE)
15: BC6 (SOFTWARE)
16: BC7 (SOFTWARE)
17: BC8 (SOFTWARE)
18: BC9 (SOFTWARE)
19: CC1 (SOFTWARE)
20: CC2 (SOFTWARE)
21: CC3 (SOFTWARE)
22: CC4 (SOFTWARE)
23: CC5 (SOFTWARE)
24: CC6 (SOFTWARE)
25: CC7 (SOFTWARE)
View:
Select:
Label:
No.
Name
Evidence
Residues
Description
01
AC1
SOFTWARE
ASN A:2 , ASP A:5 , LYS A:6
BINDING SITE FOR RESIDUE SO4 A 599
02
AC2
SOFTWARE
LEU B:3 , ASN B:38 , TYR B:41 , LYS B:44
BINDING SITE FOR RESIDUE SO4 B 600
03
AC3
SOFTWARE
LYS A:4 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 299
04
AC4
SOFTWARE
THR D:24 , GLY D:26
BINDING SITE FOR RESIDUE SO4 D 899
05
AC5
SOFTWARE
THR E:24 , THR E:25 , GLY E:26 , LYS E:36 , SO4 E:249
BINDING SITE FOR RESIDUE SO4 E 900
06
AC6
SOFTWARE
LYS B:66 , LEU D:3 , LYS D:4 , HIS D:42
BINDING SITE FOR RESIDUE SO4 D 900
07
AC7
SOFTWARE
LEU D:8 , LYS D:12 , ILE D:56 , GLU D:57 , HOH D:903
BINDING SITE FOR RESIDUE SO4 D 901
08
AC8
SOFTWARE
LYS E:36 , TYR E:40 , LYS E:46 , GLU E:47 , SO4 E:900
BINDING SITE FOR RESIDUE SO4 E 249
09
AC9
SOFTWARE
VAL A:29 , SER A:35 , LYS A:36 , GLY A:37
BINDING SITE FOR RESIDUE SO4 A 699
10
BC1
SOFTWARE
HIS B:128 , LYS B:132
BINDING SITE FOR RESIDUE SO4 B 219
11
BC2
SOFTWARE
LYS E:12 , ILE E:53 , ILE E:56 , GLU E:57
BINDING SITE FOR RESIDUE SO4 E 399
12
BC3
SOFTWARE
LYS A:36 , TYR A:40 , ASN E:2 , ASP E:5
BINDING SITE FOR RESIDUE SO4 A 799
13
BC4
SOFTWARE
TYR A:20 , LYS A:46 , GLU A:47 , GLU A:105 , TYR A:106
BINDING SITE FOR RESIDUE SO4 A 800
14
BC5
SOFTWARE
LYS E:4 , HIS E:42
BINDING SITE FOR RESIDUE SO4 E 901
15
BC6
SOFTWARE
GLN B:64 , TYR B:91 , GLN D:64 , GLU D:90 , TYR D:91
BINDING SITE FOR RESIDUE SO4 B 199
16
BC7
SOFTWARE
LYS B:67 , LYS D:60 , GLU D:90 , TYR D:91 , HOH D:903
BINDING SITE FOR RESIDUE SO4 B 499
17
BC8
SOFTWARE
THR B:45 , LYS B:46 , GLU B:47 , TYR B:106 , SO4 B:999
BINDING SITE FOR RESIDUE SO4 B 700
18
BC9
SOFTWARE
THR B:24 , THR B:25 , LYS B:46 , SO4 B:700
BINDING SITE FOR RESIDUE SO4 B 999
19
CC1
SOFTWARE
HIS A:128 , LYS A:132
BINDING SITE FOR RESIDUE SO4 A 801
20
CC2
SOFTWARE
ASN A:2 , LEU A:3 , LYS A:4 , HIS A:42
BINDING SITE FOR RESIDUE SO4 A 802
21
CC3
SOFTWARE
HIS D:128 , LYS D:132
BINDING SITE FOR RESIDUE SO4 D 902
22
CC4
SOFTWARE
HIS E:128 , LYS E:132 , HOH E:912
BINDING SITE FOR RESIDUE SO4 E 239
23
CC5
SOFTWARE
LYS D:17 , LYS D:30
BINDING SITE FOR RESIDUE SO4 D 779
24
CC6
SOFTWARE
THR E:109 , ASN E:110 , SER E:111
BINDING SITE FOR RESIDUE SO4 E 649
25
CC7
SOFTWARE
THR A:89 , GLU A:90 , TYR A:93 , TYR A:103 , GLU A:120 , TYR A:123 , ILE A:124 , ASN A:154 , ASN A:157 , THR A:161 , ILE B:100
BINDING SITE FOR RESIDUE CVI A 200
[
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]
SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
View:
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Label:
Sorry, no Info available
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49,D:19-49,E:19-49)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
4
A:19-49
B:19-49
D:19-49
E:19-49
[
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Exons
(0, 0)
Info
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1jtxa1 (A:2-72)
1b: SCOP_d1jtxb1 (B:2-72)
1c: SCOP_d1jtxd1 (D:2-72)
1d: SCOP_d1jtxe1 (E:2-72)
2a: SCOP_d1jtxa2 (A:73-187)
2b: SCOP_d1jtxb2 (B:73-187)
2c: SCOP_d1jtxd2 (D:73-187)
2d: SCOP_d1jtxe2 (E:73-187)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d1jtxa1
A:2-72
1b
d1jtxb1
B:2-72
1c
d1jtxd1
D:2-72
1d
d1jtxe1
E:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d1jtxa2
A:73-187
2b
d1jtxb2
B:73-187
2c
d1jtxd2
D:73-187
2d
d1jtxe2
E:73-187
[
close SCOP info
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1jtxA01 (A:2-50)
1b: CATH_1jtxB01 (B:2-50)
1c: CATH_1jtxD01 (D:2-50)
1d: CATH_1jtxE01 (E:2-50)
2a: CATH_1jtxA02 (A:51-187)
2b: CATH_1jtxB02 (B:51-187)
2c: CATH_1jtxD02 (D:51-187)
2d: CATH_1jtxE02 (E:51-187)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Staphylococcus aureus. Organism_taxid: 1280.
(6)
1a
1jtxA01
A:2-50
1b
1jtxB01
B:2-50
1c
1jtxD01
D:2-50
1d
1jtxE01
E:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
Staphylococcus aureus. Organism_taxid: 1280.
(6)
2a
1jtxA02
A:51-187
2b
1jtxB02
B:51-187
2c
1jtxD02
D:51-187
2d
1jtxE02
E:51-187
[
close CATH info
]
Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TetR_N_1jtxE01 (E:7-53)
1b: PFAM_TetR_N_1jtxE02 (E:7-53)
1c: PFAM_TetR_N_1jtxE03 (E:7-53)
1d: PFAM_TetR_N_1jtxE04 (E:7-53)
2a: PFAM_TetR_C_5_1jtxE05 (E:57-187)
2b: PFAM_TetR_C_5_1jtxE06 (E:57-187)
2c: PFAM_TetR_C_5_1jtxE07 (E:57-187)
2d: PFAM_TetR_C_5_1jtxE08 (E:57-187)
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)
Organisms
(
)
(
)
Clan
:
HTH
(544)
Family
:
TetR_N
(84)
Staphylococcus aureus
(11)
1a
TetR_N-1jtxE01
E:7-53
1b
TetR_N-1jtxE02
E:7-53
1c
TetR_N-1jtxE03
E:7-53
1d
TetR_N-1jtxE04
E:7-53
Clan
:
TetR_C
(33)
Family
:
TetR_C_5
(11)
Staphylococcus aureus
(11)
2a
TetR_C_5-1jtxE05
E:57-187
2b
TetR_C_5-1jtxE06
E:57-187
2c
TetR_C_5-1jtxE07
E:57-187
2d
TetR_C_5-1jtxE08
E:57-187
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Asym.Unit (138 KB)
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