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1JT0
Asym. Unit
Info
Asym.Unit (157 KB)
Biol.Unit 1 (152 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A COOPERATIVE QACR-DNA COMPLEX
Authors
:
M. A. Schumacher, M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, R. G. Brennan
Date
:
20 Aug 01 (Deposition) - 08 Mar 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.90
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B,C,D,E,F (1x)
Keywords
:
Multidrug Binding Protein, Cooperative Dna Binding, Dimer Of Dimers, Transcription/Dna Complex
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
M. A. Schumacher, M. C. Miller, S. Grkovic, M. H. Brown, R. A. Skurray, R. G. Brennan
Structural Basis For Cooperative Dna Binding By Two Dimers Of The Multidrug-Binding Protein Qacr.
Embo J. V. 21 1210 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 5)
Info
All Hetero Components
1a: SULFATE ION (SO4a)
1b: SULFATE ION (SO4b)
1c: SULFATE ION (SO4c)
1d: SULFATE ION (SO4d)
1e: SULFATE ION (SO4e)
View:
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Label:
No.
Name
Count
Type
Full Name
1
SO4
5
Ligand/Ion
SULFATE ION
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Sites
(5, 5)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
LYS B:60 , TYR B:91
BINDING SITE FOR RESIDUE SO4 B 299
2
AC2
SOFTWARE
LYS D:60 , TYR D:91
BINDING SITE FOR RESIDUE SO4 D 899
3
AC3
SOFTWARE
LYS C:60 , TYR C:91
BINDING SITE FOR RESIDUE SO4 C 699
4
AC4
SOFTWARE
LYS A:60 , TYR A:91
BINDING SITE FOR RESIDUE SO4 A 999
5
AC5
SOFTWARE
ASN B:143 , ASP B:144 , HOH B:402 , LYS D:177
BINDING SITE FOR RESIDUE SO4 B 399
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SAPs(SNPs)/Variants
(0, 0)
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(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 4)
Info
All PROSITE Patterns/Profiles
1: HTH_TETR_1 (A:19-49,B:19-49,C:19-49,D:19-49)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_TETR_1
PS01081
TetR-type HTH domain signature.
QACR_STAAU
19-49
4
A:19-49
B:19-49
C:19-49
D:19-49
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Exons
(0, 0)
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(2, 8)
Info
All SCOP Domains
1a: SCOP_d1jt0a1 (A:2-72)
1b: SCOP_d1jt0b1 (B:2-72)
1c: SCOP_d1jt0c1 (C:2-72)
1d: SCOP_d1jt0d1 (D:2-72)
2a: SCOP_d1jt0a2 (A:73-189)
2b: SCOP_d1jt0b2 (B:73-189)
2c: SCOP_d1jt0c2 (C:73-189)
2d: SCOP_d1jt0d2 (D:73-186)
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)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Tetracyclin repressor-like, N-terminal domain
(97)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
1a
d1jt0a1
A:2-72
1b
d1jt0b1
B:2-72
1c
d1jt0c1
C:2-72
1d
d1jt0d1
D:2-72
Fold
:
Tetracyclin repressor-like, C-terminal domain
(116)
Superfamily
:
Tetracyclin repressor-like, C-terminal domain
(116)
Family
:
Tetracyclin repressor-like, C-terminal domain
(114)
Protein domain
:
Multidrug binding protein QacR
(24)
Staphylococcus aureus [TaxId: 1280]
(24)
2a
d1jt0a2
A:73-189
2b
d1jt0b2
B:73-189
2c
d1jt0c2
C:73-189
2d
d1jt0d2
D:73-186
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CATH Domains
(2, 8)
Info
all CATH domains
1a: CATH_1jt0A01 (A:2-50)
1b: CATH_1jt0B01 (B:2-50)
1c: CATH_1jt0C01 (C:2-50)
1d: CATH_1jt0D01 (D:2-50)
2a: CATH_1jt0A02 (A:51-187)
2b: CATH_1jt0B02 (B:51-187)
2c: CATH_1jt0C02 (C:51-187)
2d: CATH_1jt0D02 (D:51-186)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
[unclassified]
(65)
1a
1jt0A01
A:2-50
1b
1jt0B01
B:2-50
1c
1jt0C01
C:2-50
1d
1jt0D01
D:2-50
Topology
:
Tetracycline Repressor; domain 2
(126)
Homologous Superfamily
:
Tetracycline Repressor, domain 2
(124)
[unclassified]
(2)
2a
1jt0A02
A:51-187
2b
1jt0B02
B:51-187
2c
1jt0C02
C:51-187
2d
1jt0D02
D:51-186
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Pfam Domains
(2, 8)
Info
all PFAM domains
1a: PFAM_TetR_N_1jt0D01 (D:7-53)
1b: PFAM_TetR_N_1jt0D02 (D:7-53)
1c: PFAM_TetR_N_1jt0D03 (D:7-53)
1d: PFAM_TetR_N_1jt0D04 (D:7-53)
2a: PFAM_TetR_C_5_1jt0D05 (D:57-186)
2b: PFAM_TetR_C_5_1jt0D06 (D:57-186)
2c: PFAM_TetR_C_5_1jt0D07 (D:57-186)
2d: PFAM_TetR_C_5_1jt0D08 (D:57-186)
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)
Clan
:
HTH
(544)
Family
:
TetR_N
(84)
Staphylococcus aureus
(11)
1a
TetR_N-1jt0D01
D:7-53
1b
TetR_N-1jt0D02
D:7-53
1c
TetR_N-1jt0D03
D:7-53
1d
TetR_N-1jt0D04
D:7-53
Clan
:
TetR_C
(33)
Family
:
TetR_C_5
(11)
Staphylococcus aureus
(11)
2a
TetR_C_5-1jt0D05
D:57-186
2b
TetR_C_5-1jt0D06
D:57-186
2c
TetR_C_5-1jt0D07
D:57-186
2d
TetR_C_5-1jt0D08
D:57-186
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Asym.Unit (157 KB)
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