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1JGO
Asym. Unit
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Asym.Unit (175 KB)
Biol.Unit 1 (164 KB)
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Title
:
THE PATH OF MESSENGER RNA THROUGH THE RIBOSOME. THIS FILE, 1JGO, CONTAINS THE 30S RIBOSOME SUBUNIT, THREE TRNA, AND MRNA MOLECULES. 50S RIBOSOME SUBUNIT IS IN THE FILE 1GIY
Authors
:
G. Z. Yusupova, M. M. Yusupov, J. H. D. Cate, H. F. Noller
Date
:
26 Jun 01 (Deposition) - 20 Jul 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
5.60
Chains
:
Asym. Unit : A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,1
Biol. Unit 1: A,B,C,D,E,F,G,H,I,J,K,L,M,N,O,P,Q,R,S,T,U,V,W,X,1 (1x)
Keywords
:
Ribosome Assembly, Protein Synthesis, Life, Ribosome
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. Z. Yusupova, M. M. Yusupov, J. H. Cate, H. F. Noller
The Path Of Messenger Rna Through The Ribosome.
Cell(Cambridge, Mass. ) V. 106 233 2001
[
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Hetero Components
(12, 34)
Info
All Hetero Components
01a: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAa)
01b: 6-HYDRO-1-METHYLADENOSINE-5'-MONOP... (1MAb)
02a: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGa)
02b: 2N-METHYLGUANOSINE-5'-MONOPHOSPHAT... (2MGb)
03a: 4-THIOURIDINE-5'-MONOPHOSPHATE (4SUa)
04a: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCa)
04b: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCb)
04c: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCc)
04d: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCd)
04e: 5-METHYLCYTIDINE-5'-MONOPHOSPHATE (5MCe)
05a: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUa)
05b: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUb)
05c: 5-METHYLURIDINE 5'-MONOPHOSPHATE (5MUc)
06a: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGa)
06b: 7N-METHYL-8-HYDROGUANOSINE-5'-MONO... (7MGb)
07a: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ua)
07b: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ub)
07c: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Uc)
07d: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ud)
07e: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Ue)
07f: 5,6-DIHYDROURIDINE-5'-MONOPHOSPHAT... (H2Uf)
08a: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Ga)
08b: N2-DIMETHYLGUANOSINE-5'-MONOPHOSPH... (M2Gb)
09a: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCa)
09b: O2'-METHYLYCYTIDINE-5'-MONOPHOSPHA... (OMCb)
10a: O2'-METHYLGUANOSINE-5'-MONOPHOSPHA... (OMGa)
10b: O2'-METHYLGUANOSINE-5'-MONOPHOSPHA... (OMGb)
11a: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUa)
11b: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUb)
11c: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUc)
11d: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUd)
11e: PSEUDOURIDINE-5'-MONOPHOSPHATE (PSUe)
12a: WYBUTOSINE (YGa)
12b: WYBUTOSINE (YGb)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
1MA
2
Mod. Nucleotide
6-HYDRO-1-METHYLADENOSINE-5'-MONOPHOSPHATE
2
2MG
2
Mod. Nucleotide
2N-METHYLGUANOSINE-5'-MONOPHOSPHATE
3
4SU
1
Mod. Nucleotide
4-THIOURIDINE-5'-MONOPHOSPHATE
4
5MC
5
Mod. Nucleotide
5-METHYLCYTIDINE-5'-MONOPHOSPHATE
5
5MU
3
Mod. Nucleotide
5-METHYLURIDINE 5'-MONOPHOSPHATE
6
7MG
2
Mod. Nucleotide
7N-METHYL-8-HYDROGUANOSINE-5'-MONOPHOSPHATE
7
H2U
6
Mod. Nucleotide
5,6-DIHYDROURIDINE-5'-MONOPHOSPHATE
8
M2G
2
Mod. Nucleotide
N2-DIMETHYLGUANOSINE-5'-MONOPHOSPHATE
9
OMC
2
Mod. Nucleotide
O2'-METHYLYCYTIDINE-5'-MONOPHOSPHATE
10
OMG
2
Mod. Nucleotide
O2'-METHYLGUANOSINE-5'-MONOPHOSPHATE
11
PSU
5
Mod. Nucleotide
PSEUDOURIDINE-5'-MONOPHOSPHATE
12
YG
2
Mod. Residue
WYBUTOSINE
[
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Sites
(0, 0)
Info
All Sites
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Sorry, no Info available
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
All SNPs/Variants
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Sorry, no Info available
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PROSITE Patterns/Profiles
(19, 19)
Info
All PROSITE Patterns/Profiles
01: RIBOSOMAL_S13_2 (P:4-112)
02: S5_DSRBD (H:6-69)
03: RIBOSOMAL_S2_1 (E:7-18)
04: RIBOSOMAL_S7 (J:20-46)
05: RIBOSOMAL_S14 (Q:23-45,Q:23-45)
06: RIBOSOMAL_S5 (H:23-55)
07: RIBOSOMAL_S10 (M:27-42)
08: RIBOSOMAL_S18 (U:32-55)
09: RIBOSOMAL_S15 (R:39-69)
10: RIBOSOMAL_S12 (O:46-53)
11: RIBOSOMAL_S6 (I:44-53)
12: RIBOSOMAL_S19 (V:53-77,V:53-77)
13: RIBOSOMAL_S17 (T:54-66)
14: RIBOSOMAL_S9 (L:67-85)
15: RIBOSOMAL_S13_1 (P:88-101)
16: RIBOSOMAL_S11 (N:95-117)
17: RIBOSOMAL_S4 (G:97-121)
18: S4 (G:99-161)
19: RIBOSOMAL_S8 (K:108-125,K:108-125)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_S13_2
PS50159
Ribosomal protein S13 family profile.
RS13_THET8
4-112
1
P:4-112
2
S5_DSRBD
PS50881
S5 double stranded RNA-binding domain profile.
RS5_THET8
6-69
1
H:6-69
3
RIBOSOMAL_S2_1
PS00962
Ribosomal protein S2 signature 1.
RS2_THET8
7-18
1
E:7-18
4
RIBOSOMAL_S7
PS00052
Ribosomal protein S7 signature.
RS7_THET8
20-46
1
J:20-46
5
RIBOSOMAL_S14
PS00527
Ribosomal protein S14 signature.
RS14Z_THEAQ
23-45
1
Q:23-45
RS14Z_THET8
23-45
1
Q:23-45
6
RIBOSOMAL_S5
PS00585
Ribosomal protein S5 signature.
RS5_THET8
23-55
1
H:23-55
7
RIBOSOMAL_S10
PS00361
Ribosomal protein S10 signature.
RS10_THET8
27-42
1
M:27-42
8
RIBOSOMAL_S18
PS00057
Ribosomal protein S18 signature.
RS18_THET8
32-55
1
U:32-55
9
RIBOSOMAL_S15
PS00362
Ribosomal protein S15 signature.
RS15_THET8
39-69
1
R:39-69
10
RIBOSOMAL_S12
PS00055
Ribosomal protein S12 signature.
RS12_THET8
43-50
1
O:46-53
11
RIBOSOMAL_S6
PS01048
Ribosomal protein S6 signature.
RS6_THET8
44-53
1
I:44-53
12
RIBOSOMAL_S19
PS00323
Ribosomal protein S19 signature.
RS19_THET8
53-77
1
V:53-77
RS19_THETH
53-77
1
V:53-77
13
RIBOSOMAL_S17
PS00056
Ribosomal protein S17 signature.
RS17_THET8
54-66
1
T:54-66
14
RIBOSOMAL_S9
PS00360
Ribosomal protein S9 signature.
RS9_THET8
67-85
1
L:67-85
15
RIBOSOMAL_S13_1
PS00646
Ribosomal protein S13 signature.
RS13_THET8
88-101
1
P:88-101
16
RIBOSOMAL_S11
PS00054
Ribosomal protein S11 signature.
RS11_THET8
95-117
1
N:95-117
17
RIBOSOMAL_S4
PS00632
Ribosomal protein S4 signature.
RS4_THET8
97-121
1
G:97-121
18
S4
PS50889
S4 RNA-binding domain profile.
RS4_THET8
99-161
1
G:99-161
19
RIBOSOMAL_S8
PS00053
Ribosomal protein S8 signature.
RS8_THEAQ
108-125
1
K:108-125
RS8_THET8
108-125
1
K:108-125
[
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]
Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 20)
Info
All SCOP Domains
1a: SCOP_d1jgoe_ (E:)
1b: SCOP_d1jgof_ (F:)
1c: SCOP_d1jgog_ (G:)
1d: SCOP_d1jgoh_ (H:)
1e: SCOP_d1jgoi_ (I:)
1f: SCOP_d1jgoj_ (J:)
1g: SCOP_d1jgok_ (K:)
1h: SCOP_d1jgol_ (L:)
1i: SCOP_d1jgom_ (M:)
1j: SCOP_d1jgon_ (N:)
1k: SCOP_d1jgoo_ (O:)
1l: SCOP_d1jgop_ (P:)
1m: SCOP_d1jgoq_ (Q:)
1n: SCOP_d1jgor_ (R:)
1o: SCOP_d1jgos_ (S:)
1p: SCOP_d1jgot_ (T:)
1q: SCOP_d1jgou_ (U:)
1r: SCOP_d1jgov_ (V:)
1s: SCOP_d1jgow_ (W:)
1t: SCOP_d1jgox_ (X:)
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Families
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Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
Low resolution protein structures
(283)
Fold
:
Ribosome and ribosomal fragments
(154)
Superfamily
:
Ribosome and ribosomal fragments
(154)
Family
:
Ribosome complexes
(103)
Protein domain
:
70S ribosome functional complex
(103)
Thermus thermophilus [TaxId: 274]
(20)
1a
d1jgoe_
E:
1b
d1jgof_
F:
1c
d1jgog_
G:
1d
d1jgoh_
H:
1e
d1jgoi_
I:
1f
d1jgoj_
J:
1g
d1jgok_
K:
1h
d1jgol_
L:
1i
d1jgom_
M:
1j
d1jgon_
N:
1k
d1jgoo_
O:
1l
d1jgop_
P:
1m
d1jgoq_
Q:
1n
d1jgor_
R:
1o
d1jgos_
S:
1p
d1jgot_
T:
1q
d1jgou_
U:
1r
d1jgov_
V:
1s
d1jgow_
W:
1t
d1jgox_
X:
[
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CATH Domains
(0, 0)
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all CATH domains
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Pfam Domains
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