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1HC8
Biol. Unit 2
Info
Asym.Unit (80 KB)
Biol.Unit 1 (38 KB)
Biol.Unit 2 (37 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF A CONSERVED RIBOSOMAL PROTEIN-RNA COMPLEX
Authors
:
G. L. Conn, D. E. Draper, E. E. Lattman, A. G. Gittis
Date
:
27 Apr 01 (Deposition) - 23 May 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.80
Chains
:
Asym. Unit : A,B,C,D
Biol. Unit 1: A,C (1x)
Biol. Unit 2: B,D (1x)
Keywords
:
Ribosome, Ribosomal Rna, Tertiary Structure, Rna-Protein
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
G. L. Conn, A. G. Gittis, E. E. Lattman, V. K. Misra, D. E. Draper
A Compact Rna Tertiary Structure Contains A Buried Backbone-K+ Complex
J. Mol. Biol. V. 318 963 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 1)
Info
All Hetero Components
1a: GUANOSINE-5'-TRIPHOSPHATE (GTPa)
1b: GUANOSINE-5'-TRIPHOSPHATE (GTPb)
2a: POTASSIUM ION (Ka)
2b: POTASSIUM ION (Kb)
3a: MAGNESIUM ION (MGa)
3b: MAGNESIUM ION (MGb)
3c: MAGNESIUM ION (MGc)
3d: MAGNESIUM ION (MGd)
3e: MAGNESIUM ION (MGe)
3f: MAGNESIUM ION (MGf)
3g: MAGNESIUM ION (MGg)
3h: MAGNESIUM ION (MGh)
3i: MAGNESIUM ION (MGi)
3j: MAGNESIUM ION (MGj)
3k: MAGNESIUM ION (MGk)
3l: MAGNESIUM ION (MGl)
3m: MAGNESIUM ION (MGm)
3n: MAGNESIUM ION (MGn)
3o: MAGNESIUM ION (MGo)
3p: MAGNESIUM ION (MGp)
3q: MAGNESIUM ION (MGq)
3r: MAGNESIUM ION (MGr)
3s: MAGNESIUM ION (MGs)
3t: MAGNESIUM ION (MGt)
3u: MAGNESIUM ION (MGu)
4a: OSMIUM ION (OSa)
4b: OSMIUM ION (OSb)
4c: OSMIUM ION (OSc)
4d: OSMIUM ION (OSd)
View:
Select:
Label:
No.
Name
Count
Type
Full Name
1
GTP
1
Mod. Nucleotide
GUANOSINE-5'-TRIPHOSPHATE
2
K
-1
Ligand/Ion
POTASSIUM ION
3
MG
-1
Ligand/Ion
MAGNESIUM ION
4
OS
-1
Ligand/Ion
OSMIUM ION
[
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Sites
(12, 12)
Info
All Sites
01: AC6 (SOFTWARE)
02: AC7 (SOFTWARE)
03: BC3 (SOFTWARE)
04: BC4 (SOFTWARE)
05: BC5 (SOFTWARE)
06: BC6 (SOFTWARE)
07: BC7 (SOFTWARE)
08: BC8 (SOFTWARE)
09: BC9 (SOFTWARE)
10: CC1 (SOFTWARE)
11: CC2 (SOFTWARE)
12: CC3 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
01
AC6
SOFTWARE
U C:115 , U C:116 , A D:336
BINDING SITE FOR RESIDUE MG C1165
02
AC7
SOFTWARE
GTP C:101 , U D:358
BINDING SITE FOR RESIDUE MG C1166
03
BC3
SOFTWARE
G D:321
BINDING SITE FOR RESIDUE MG D1360
04
BC4
SOFTWARE
G D:321 , A D:348
BINDING SITE FOR RESIDUE MG D1361
05
BC5
SOFTWARE
A D:319 , A D:320 , C D:322 , A D:323
BINDING SITE FOR RESIDUE K D1362
06
BC6
SOFTWARE
G D:313 , A D:320 , C D:322
BINDING SITE FOR RESIDUE MG D1363
07
BC7
SOFTWARE
GTP C:101 , GTP D:301
BINDING SITE FOR RESIDUE MG D1364
08
BC8
SOFTWARE
A D:311
BINDING SITE FOR RESIDUE MG D1365
09
BC9
SOFTWARE
U C:158 , GTP D:301
BINDING SITE FOR RESIDUE MG D1366
10
CC1
SOFTWARE
A D:323 , U D:344
BINDING SITE FOR RESIDUE MG D1367
11
CC2
SOFTWARE
G D:306
BINDING SITE FOR RESIDUE MG D1368
12
CC3
SOFTWARE
G D:312 , G D:313 , A D:320
BINDING SITE FOR RESIDUE MG D1372
[
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are only available for the asymmetric unit)
All SNPs/Variants
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PROSITE Patterns/Profiles
(1, 1)
Info
All PROSITE Patterns/Profiles
1: RIBOSOMAL_L11 (B:261-275)
;
View:
Select:
Label:
End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
RIBOSOMAL_L11
PS00359
Ribosomal protein L11 signature.
RL11_GEOSE
118-133
1
-
B:261-275
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Exons
(0, 0)
Info
All Exons
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All Exon Boundaries
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
(no "Exon" information available for biological units yet)
SCOP Domains
(1, 2)
Info
All SCOP Domains
1a: SCOP_d1hc8a_ (A:)
1b: SCOP_d1hc8b_ (B:)
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)
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)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Ribosomal protein L11, C-terminal domain
(96)
Family
:
Ribosomal protein L11, C-terminal domain
(96)
Protein domain
:
Ribosomal protein L11, C-terminal domain
(96)
Bacillus stearothermophilus [TaxId: 1422]
(8)
1a
d1hc8a_
A:
1b
d1hc8b_
B:
[
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CATH Domains
(1, 2)
Info
all CATH domains
1a: CATH_1hc8B00 (B:206-275)
1b: CATH_1hc8A00 (A:2-75)
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Organisms
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)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
[code=1.10.10.250, no name defined]
(69)
Bacillus stearothermophilus. Organism_taxid: 1422.
(1)
1a
1hc8B00
B:206-275
1b
1hc8A00
A:2-75
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain D
Asymmetric Unit 1
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Asym.Unit (80 KB)
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Header - Biol.Unit 1
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