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1H89
Asym. Unit
Info
Asym.Unit (74 KB)
Biol.Unit 1 (68 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF TERNARY PROTEIN-DNA COMPLEX2
Authors
:
T. H. Tahirov, K. Ogata
Date
:
30 Jan 01 (Deposition) - 28 Jan 02 (Release) - 24 Feb 09 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.45
Chains
:
Asym. Unit : A,B,C,D,E
Biol. Unit 1: A,B,C,D,E (1x)
Keywords
:
Transcription/Dna, Protein-Dna Complex, Transcription Regulation, Bzip, Proto-Oncogene, Myb, C-Myb, C/Ebp, Crystal Structure
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
T. H. Tahirov, K. Sato, E. Ichikawa-Iwata, M. Sasaki, T. Inoue-Bungo, M. Shiina, K. Kimura, S. Takata, A. Fujikawa, H. Morii, T. Kumasaka, M. Yamamoto, S. Ishii, K. Ogata
Mechanism Of C-Myb-C/Ebpbeta Cooperation From Separated Sites On A Promoter
Cell(Cambridge, Mass. ) V. 108 57 2002
(for further references see the
PDB file header
)
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Hetero Components
(1, 2)
Info
All Hetero Components
1a: POTASSIUM ION (Ka)
1b: POTASSIUM ION (Kb)
View:
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Label:
No.
Name
Count
Type
Full Name
1
K
2
Ligand/Ion
POTASSIUM ION
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Sites
(2, 2)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
GLU B:336 , ALA C:119 , LEU C:122 , ARG C:125
BINDING SITE FOR RESIDUE K C1192
2
AC2
SOFTWARE
ALA C:170 , LEU C:173 , PRO C:174 , ARG C:176
BINDING SITE FOR RESIDUE K C1193
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(1, 2)
Info
All PROSITE Patterns/Profiles
1: HTH_MYB (C:87-142|-|C:143-191)
;
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_MYB
PS51294
Myb-type HTH DNA-binding domain profile.
MYB_MOUSE
87-142
35-86
143-193
2
C:87-142
-
C:143-191
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Exons
(1, 2)
Info
All Exons
Exon 1.1 (A:273-336 | B:273-336)
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All Exon Boundaries
1: Boundary -/1.1
2: Boundary 1.1/-
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
ENSEMBL
UniProtKB
PDB
No.
Transcript ID
Exon
Exon ID
Genome Location
Length
ID
Location
Length
Count
Location
Length
1.1
ENST00000303004
1
ENSE00001172478
chr20:
48807376-48809212
1837
CEBPB_HUMAN
1-410
410
2
A:273-336
B:273-336
64
64
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SCOP Domains
(2, 5)
Info
All SCOP Domains
1a: SCOP_d1h89c1 (C:77-88)
1b: SCOP_d1h89c2 (C:89-143)
1c: SCOP_d1h89c3 (C:144-191)
2a: SCOP_d1h89a_ (A:)
2b: SCOP_d1h89b_ (B:)
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)
(
)
Protein Domains
(
)
(
)
Organisms
(
)
(
)
Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
Homeodomain-like
(373)
Family
:
Myb/SANT domain
(34)
Protein domain
:
c-Myb, DNA-binding domain
(16)
Mouse (Mus musculus) [TaxId: 10090]
(16)
1a
d1h89c1
C:77-88
1b
d1h89c2
C:89-143
1c
d1h89c3
C:144-191
Class
:
Coiled coil proteins
(689)
Fold
:
Parallel coiled-coil
(407)
Superfamily
:
Leucine zipper domain
(105)
Family
:
Leucine zipper domain
(105)
Protein domain
:
C/ebp beta
(11)
Human (Homo sapiens) [TaxId: 9606]
(10)
2a
d1h89a_
A:
2b
d1h89b_
B:
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CATH Domains
(2, 4)
Info
all CATH domains
1a: CATH_1h89C01 (C:89-144)
1b: CATH_1h89C02 (C:145-191)
2a: CATH_1h89A00 (A:273-336)
2b: CATH_1h89B00 (B:273-336)
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)
(
)
Organisms
(
)
(
)
Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
Homeodomain-like
(288)
Human (Homo sapiens)
(23)
1a
1h89C01
C:89-144
1b
1h89C02
C:145-191
Architecture
:
Up-down Bundle
(3216)
Topology
:
Single alpha-helices involved in coiled-coils or other helix-helix interfaces
(552)
Homologous Superfamily
:
[code=1.20.5.170, no name defined]
(60)
Human (Homo sapiens)
(20)
2a
1h89A00
A:273-336
2b
1h89B00
B:273-336
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Pfam Domains
(0, 0)
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all PFAM domains
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Chain E
Asymmetric Unit 1
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