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1FSE
Asym. Unit
Info
Asym.Unit (75 KB)
Biol.Unit 1 (26 KB)
Biol.Unit 2 (23 KB)
Biol.Unit 3 (26 KB)
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(1)
Title
:
CRYSTAL STRUCTURE OF THE BACILLUS SUBTILIS REGULATORY PROTEIN GERE
Authors
:
V. M. -A. Ducros, R. J. Lewis, C. S. Verma, E. J. Dodson, G. Leonard, J. P. Turkenburg, G. N. Murshudov, A. J. Wilkinson, J. A. Brannigan
Date
:
08 Sep 00 (Deposition) - 21 Mar 01 (Release) - 13 Jul 11 (Revision)
Method
:
X-RAY DIFFRACTION
Resolution
:
2.05
Chains
:
Asym. Unit : A,B,C,D,E,F
Biol. Unit 1: A,B (1x)
Biol. Unit 2: C,F (1x)
Biol. Unit 3: D,E (1x)
Keywords
:
Helix-Turn-Helix Dna-Binding Protein Transcriptional Regulator, Transcription
(Keyword Search:
[
Gene Ontology, PubMed, Web (Google)
]
)
Reference
:
V. M. Ducros, R. J. Lewis, C. S. Verma, E. J. Dodson, G. Leonard, J. P. Turkenburg, G. N. Murshudov, A. J. Wilkinson, J. A. Brannigan
Crystal Structure Of Gere, The Ultimate Transcriptional Regulator Of Spore Formation In Bacillus Subtilis.
J. Mol. Biol. V. 306 759 2001
(for further references see the
PDB file header
)
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Hetero Components
(2, 7)
Info
All Hetero Components
1a: GLYCEROL (GOLa)
1b: GLYCEROL (GOLb)
1c: GLYCEROL (GOLc)
2a: SULFATE ION (SO4a)
2b: SULFATE ION (SO4b)
2c: SULFATE ION (SO4c)
2d: SULFATE ION (SO4d)
View:
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Label:
No.
Name
Count
Type
Full Name
1
GOL
3
Ligand/Ion
GLYCEROL
2
SO4
4
Ligand/Ion
SULFATE ION
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Sites
(7, 7)
Info
All Sites
1: AC1 (SOFTWARE)
2: AC2 (SOFTWARE)
3: AC3 (SOFTWARE)
4: AC4 (SOFTWARE)
5: AC5 (SOFTWARE)
6: AC6 (SOFTWARE)
7: AC7 (SOFTWARE)
View:
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Label:
No.
Name
Evidence
Residues
Description
1
AC1
SOFTWARE
HOH B:622 , HOH B:664 , ARG C:59 , SER C:60 , HOH C:527 , HOH C:560
BINDING SITE FOR RESIDUE SO4 C 501
2
AC2
SOFTWARE
SER B:39 , THR B:42 , LYS C:41 , ARG C:44 , HOH C:525 , THR D:13 , ASN D:49 , LYS D:53 , GOL D:601 , HOH D:669
BINDING SITE FOR RESIDUE SO4 C 502
3
AC3
SOFTWARE
SER A:39 , THR A:42 , HOH A:76 , THR C:13 , ASN C:49 , LYS C:53 , LYS D:41 , ARG D:44 , HOH D:614 , HOH D:620
BINDING SITE FOR RESIDUE SO4 D 503
4
AC4
SOFTWARE
ARG D:59 , SER D:60 , HOH D:622 , HOH D:642
BINDING SITE FOR RESIDUE SO4 D 504
5
AC5
SOFTWARE
THR C:13 , LYS C:14 , ARG C:15 , ARG F:17 , GLU F:21 , HOH F:601
BINDING SITE FOR RESIDUE GOL F 600
6
AC6
SOFTWARE
PHE B:37 , ILE B:38 , SER B:39 , THR B:42 , ARG C:44 , SO4 C:502 , HOH C:520 , ASN D:49 , GLN D:52 , LYS D:53
BINDING SITE FOR RESIDUE GOL D 601
7
AC7
SOFTWARE
LYS B:14 , ARG B:17 , GLU B:18 , HOH B:630 , HOH B:662
BINDING SITE FOR RESIDUE GOL B 602
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SAPs(SNPs)/Variants
(0, 0)
Info
(mutated residues are not available)
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PROSITE Patterns/Profiles
(2, 7)
Info
All PROSITE Patterns/Profiles
1: HTH_LUXR_2 (B:5-70)
2: HTH_LUXR_1 (A:26-53,B:26-53,C:26-53,D:26-53,E:...)
;
View:
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End label:
PROSITE
UniProtKB
PDB
No.
ID
AC
Description
ID
Location
Count
Location
1
HTH_LUXR_2
PS50043
LuxR-type HTH domain profile.
GERE_BACSU
5-70
1
B:5-70
2
HTH_LUXR_1
PS00622
LuxR-type HTH domain signature.
GERE_BACSU
26-53
6
A:26-53
B:26-53
C:26-53
D:26-53
E:26-53
F:26-53
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Exons
(0, 0)
Info
All Exons
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Note:
Exon boundaries colored in "red" are actually farther away from the residue due to missing residues in the structure.
SCOP Domains
(1, 6)
Info
All SCOP Domains
1a: SCOP_d1fsea_ (A:)
1b: SCOP_d1fseb_ (B:)
1c: SCOP_d1fsec_ (C:)
1d: SCOP_d1fsed_ (D:)
1e: SCOP_d1fsee_ (E:)
1f: SCOP_d1fsef_ (F:)
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Protein Domains
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(
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Organisms
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(
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Class
:
All alpha proteins
(14657)
Fold
:
DNA/RNA-binding 3-helical bundle
(1299)
Superfamily
:
C-terminal effector domain of the bipartite response regulators
(45)
Family
:
GerE-like (LuxR/UhpA family of transcriptional regulators)
(11)
Protein domain
:
Germination protein GerE
(1)
Bacillus subtilis [TaxId: 1423]
(1)
1a
d1fsea_
A:
1b
d1fseb_
B:
1c
d1fsec_
C:
1d
d1fsed_
D:
1e
d1fsee_
E:
1f
d1fsef_
F:
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CATH Domains
(1, 6)
Info
all CATH domains
1a: CATH_1fseB00 (B:5-74)
1b: CATH_1fseC00 (C:8-74)
1c: CATH_1fseD00 (D:9-74)
1d: CATH_1fseE00 (E:11-74)
1e: CATH_1fseF00 (F:10-74)
1f: CATH_1fseA00 (A:8-74)
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Organisms
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(
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Class
:
Mainly Alpha
(13335)
Architecture
:
Orthogonal Bundle
(10391)
Topology
:
Arc Repressor Mutant, subunit A
(1030)
Homologous Superfamily
:
'winged helix' repressor DNA binding domain
(507)
Bacillus subtilis. Organism_taxid: 1423.
(6)
1a
1fseB00
B:5-74
1b
1fseC00
C:8-74
1c
1fseD00
D:9-74
1d
1fseE00
E:11-74
1e
1fseF00
F:10-74
1f
1fseA00
A:8-74
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Pfam Domains
(0, 0)
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Asymmetric Unit 1
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Asym.Unit (75 KB)
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Header - Biol.Unit 1
Biol.Unit 2 (23 KB)
Header - Biol.Unit 2
Biol.Unit 3 (26 KB)
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