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(-) Description

Title :  1.55 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF GLUTATHIONE REDUCTASE FROM YERSINIA PESTIS IN COMPLEX WITH FAD
 
Authors :  G. Minasov, L. Shuvalova, I. Dubrovska, A. Cardona-Correa, S. Grimsha W. F. Anderson, Center For Structural Genomics Of Infectious D (Csgid)
Date :  03 Apr 17  (Deposition) - 19 Apr 17  (Release) - 19 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Glutathione Reductase, Fad, Hydrolase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  G. Minasov, L. Shuvalova, I. Dubrovska, A. Cardona-Correa, S. Grimshaw, K. Kwon, W. F. Anderson, Center For Structural Genomics Of Infectious Diseases (Csgid)
1. 55 Angstrom Resolution Crystal Structure Of Glutathione Reductase From Yersinia Pestis In Complex With Fad.
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - GLUTATHIONE OXIDOREDUCTASE
    Chains: A, B
    EC Number: 1.8.1.7
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GOR
    Organism Scientific: YERSINIA PESTIS KIM10+
    Organism Taxid: 187410

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 8)

Asymmetric/Biological Unit (4, 8)
No.NameCountTypeFull Name
1BDF2Ligand/IonBETA-D-FRUCTOPYRANOSE
2FAD2Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
3GOL2Ligand/IonGLYCEROL
4K2Ligand/IonPOTASSIUM ION

(-) Sites  (8, 8)

Asymmetric Unit (8, 8)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREPHE A:442 , ASP A:443 , THR A:445 , VAL A:457 , HOH A:983 , HOH A:1059 , HOH A:1080binding site for residue K A 501
2AC2SOFTWAREILE A:20 , GLY A:21 , GLY A:23 , SER A:24 , GLY A:25 , ILE A:43 , GLU A:44 , ALA A:45 , GLY A:50 , THR A:51 , CYS A:52 , VAL A:55 , GLY A:56 , CYS A:57 , LYS A:60 , GLY A:123 , PHE A:124 , ALA A:125 , ALA A:148 , THR A:149 , GLY A:150 , TYR A:187 , ARG A:273 , GLY A:312 , ASP A:313 , GLU A:319 , LEU A:320 , THR A:321 , PRO A:322 , BDF A:503 , HOH A:645 , HOH A:723 , HOH A:724 , HOH A:762 , HOH A:813 , HOH A:862 , HOH A:887 , HOH A:937 , HIS B:449 , PRO B:450 , HOH B:918binding site for residue FAD A 502
3AC3SOFTWARELYS A:46 , THR A:51 , GLY A:151 , ARG A:152 , PRO A:153 , ASP A:168 , ARG A:273 , FAD A:502 , HOH A:764 , HOH A:770 , HOH A:846 , HOH A:859 , HOH A:922binding site for residue BDF A 503
4AC4SOFTWAREPHE A:385 , THR A:386 , HOH A:646 , HOH A:702 , HOH A:870 , HOH A:1135binding site for residue GOL A 504
5AC5SOFTWAREPHE B:442 , ASP B:443 , THR B:445 , VAL B:457 , HOH B:990 , HOH B:1063 , HOH B:1097binding site for residue K B 501
6AC6SOFTWAREHIS A:449 , PRO A:450 , HOH A:869 , ILE B:20 , GLY B:21 , GLY B:23 , SER B:24 , GLY B:25 , ILE B:43 , GLU B:44 , ALA B:45 , LYS B:46 , GLY B:50 , THR B:51 , CYS B:52 , VAL B:55 , GLY B:56 , CYS B:57 , LYS B:60 , GLY B:123 , PHE B:124 , ALA B:125 , ALA B:148 , THR B:149 , GLY B:150 , TYR B:187 , ARG B:273 , GLY B:312 , ASP B:313 , GLU B:319 , LEU B:320 , THR B:321 , PRO B:322 , BDF B:503 , HOH B:657 , HOH B:709 , HOH B:749 , HOH B:797 , HOH B:826 , HOH B:875 , HOH B:879 , HOH B:913binding site for residue FAD B 502
7AC7SOFTWARETHR B:51 , GLY B:151 , ARG B:152 , PRO B:153 , ASP B:168 , ARG B:273 , FAD B:502 , HOH B:729 , HOH B:809 , HOH B:901 , HOH B:923 , HOH B:932 , HOH B:1038binding site for residue BDF B 503
8AC8SOFTWAREPHE B:385 , THR B:386 , HOH B:658 , HOH B:719 , HOH B:722 , HOH B:1218binding site for residue GOL B 504

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1A:52 -A:57
2B:52 -B:57

(-) Cis Peptide Bonds  (6, 6)

Asymmetric/Biological Unit
No.Residues
1Gly A:232 -Pro A:233
2His A:356 -Pro A:357
3His A:449 -Pro A:450
4Gly B:232 -Pro B:233
5His B:356 -Pro B:357
6His B:449 -Pro B:450

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5VDN)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5VDN)

(-) Exons   (0, 0)

(no "Exon" information available for 5VDN)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...eeee..eeee..eeeeeeeeee...eee......hhhhh.hhhhhhhh.....eeeee..hhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhh.eee....eeeeee.....eeeee....eeee.eeee...eee.....hhhhhh.....................eee.hhhhh...hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeeeehhhhhh.....eeeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vdn A  12 TKHYDYLAIGGGSGGIASINRAAMYGKKCALIEAKQLGGTCVNVGCVPKKVMWHAAQIAEAIHLYGPDYGFDTTVNHFDWKKLIANRTAYIDRIHQSYERGLGNNKVDVIQGFARFVDAHTVEVNGETITADHILIATGGRPSHPDIPGAEYGIDSDGFFELDEMPKRVAVVGAGYIAVEIAGVLNGLGTETHLFVRKHAPLRTFDPLIVETLLEVMNTEGPKLHTESVPKAVIKNADGSLTLQLENGTEVTVDHLIWAIGREPATDNLNLSVTGVKTNDKGYIEVDKFQNTNVKGIYAVGDNTGVVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTIGLTEPQAREKFGDDQVKVYTSSFTAMYSAVTQHRQPCRMKLVCVGAEEKIVGIHGIGFGMDEILQGFAVAMKMGATKKDFDNTVAIHPTAAEEFVTMR 460
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451         


Chain B from PDB  Type:PROTEIN  Length:449
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeee..hhhhhhhhhhhhhh...eeeee....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeeeehhhhhhhhhhhhhhhhhhhhhhhhhhh..eeee...eeee..eeee..eeeeeeeeee...eee......hhhhh.hhhhhhhh.....eeeee..hhhhhhhhhhhhhhh.eeeee..........hhhhhhhhhhhhhhhh.eee....eeeeee.....eeeee....eeee.eeee...eee.....hhhhhh.....................eee.hhhhh...hhhhhhhhhhhhhhhhhh.............eee.....eeeee.hhhhhhhhhh...eeeeeeeeehhhhhh.....eeeeeeeee....eeeeeeee..hhhhhhhhhhhhhhh..hhhhhhh.......hhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5vdn B  12 TKHYDYLAIGGGSGGIASINRAAMYGKKCALIEAKQLGGTCVNVGCVPKKVMWHAAQIAEAIHLYGPDYGFDTTVNHFDWKKLIANRTAYIDRIHQSYERGLGNNKVDVIQGFARFVDAHTVEVNGETITADHILIATGGRPSHPDIPGAEYGIDSDGFFELDEMPKRVAVVGAGYIAVEIAGVLNGLGTETHLFVRKHAPLRTFDPLIVETLLEVMNTEGPKLHTESVPKAVIKNADGSLTLQLENGTEVTVDHLIWAIGREPATDNLNLSVTGVKTNDKGYIEVDKFQNTNVKGIYAVGDNTGVVELTPVAVAAGRRLSERLFNNKPDEHLDYSNIPTVVFSHPPIGTIGLTEPQAREKFGDDQVKVYTSSFTAMYSAVTQHRQPCRMKLVCVGAEEKIVGIHGIGFGMDEILQGFAVAMKMGATKKDFDNTVAIHPTAAEEFVTMR 460
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5VDN)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5VDN)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5VDN)

(-) Gene Ontology  (10, 10)

Asymmetric/Biological Unit(hide GO term definitions)

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