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(-) Description

Title :  CRYSTAL STRUCTURE OF THE CATALYTIC DOMAIN OF THE INOSINE MONOPHOSPHATE DEHYDROGENASE FROM LISTERIA MONOCYTOGENES IN THE COMPLEX WITH IMP AND Q21
 
Authors :  Y. Kim, M. Makowska-Grzyska, J. Osipiuk, W. F. Anderson, A. Joachimiak For Structural Genomics Of Infectious Diseases (Csgid)
Date :  04 Feb 17  (Deposition) - 05 Apr 17  (Release) - 05 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.35
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (4x)
Keywords :  Impdh, Delta Cbs, Structural Genomics, Center For Structural Genomics Of Infectious Diseases, Csgid, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Kim, M. Makowska-Grzyska, J. Osipiuk, W. F. Anderson, A. Joachimiak, Center For Structural Genomics Of Infectious Diseases (Csgid)
Crystal Structure Of The Catalytic Domain Of The Inosine Monophosphate Dehydrogenase From Listeria Monocytogenes In The Complex With Imp And Q21
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - INOSINE-5'-MONOPHOSPHATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.205
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG50
    Expression System Strain: BL21(DE3) MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: GUAB
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid: 169963
    Strain: ATCC BAA-679 / EGD-E
    Synonym: IMPDH

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (4x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (5, 9)

Asymmetric Unit (5, 9)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO3Ligand/Ion1,2-ETHANEDIOL
3GOL3Ligand/IonGLYCEROL
4IMP1Ligand/IonINOSINIC ACID
5Q211Ligand/Ion(2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(PYRIDIN-4-YL)-1,3-BENZOXAZOL-5-YL]PROPANAMIDE
Biological Unit 1 (4, 32)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2EDO12Ligand/Ion1,2-ETHANEDIOL
3GOL12Ligand/IonGLYCEROL
4IMP4Ligand/IonINOSINIC ACID
5Q214Ligand/Ion(2S)-2-(NAPHTHALEN-1-YLOXY)-N-[2-(PYRIDIN-4-YL)-1,3-BENZOXAZOL-5-YL]PROPANAMIDE

(-) Sites  (9, 9)

Asymmetric Unit (9, 9)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREALA A:49 , MET A:51 , GLY A:305 , SER A:306 , ILE A:307 , CYS A:308 , ASP A:341 , GLY A:343 , MET A:362 , GLY A:364 , SER A:365 , TYR A:388 , GLY A:390 , MET A:391 , GLY A:392 , GLU A:416 , GLY A:417 , Q21 A:501 , HOH A:623 , HOH A:648 , HOH A:649 , HOH A:667 , HOH A:676binding site for residue IMP A 500
2AC2SOFTWARESER A:23 , VAL A:25 , LEU A:26 , PRO A:27 , ALA A:253 , SER A:257 , THR A:310 , MET A:391 , GLY A:392 , VAL A:414 , GLU A:416 , SER A:441 , TYR A:445 , IMP A:500 , HOH A:686binding site for residue Q21 A 501
3AC3SOFTWAREPHE A:271 , ASP A:273 , VAL A:274 , HOH A:671binding site for residue CL A 502
4AC4SOFTWARETHR A:322 , HOH A:619binding site for residue GOL A 503
5AC5SOFTWARELEU A:11 , ASP A:15 , ARG A:462 , MET A:463 , THR A:464binding site for residue GOL A 504
6AC6SOFTWAREALA A:37 , PRO A:38 , SER A:39 , ASP A:273 , VAL A:274 , ASP A:296binding site for residue GOL A 505
7AC7SOFTWAREASN A:43 , GLY A:67binding site for residue EDO A 506
8AC8SOFTWAREGLU A:35 , GLY A:335binding site for residue EDO A 507
9AC9SOFTWAREVAL A:245 , ASP A:246 , HOH A:671binding site for residue EDO A 508

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UPY)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Gly A:279 -Asn A:280

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UPY)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UPY)

(-) Exons   (0, 0)

(no "Exon" information available for 5UPY)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:350
                                                                                                                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhh.......hhh.eee.......hhhhh...eeee..eee...eee.......hhhhhhhhhhh..eeee....hhhhhhhhhhhhhh......eeee....hhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhh...eeeeeee.hhhhhhhhhh....eeee........hhhhhh....hhhhhhhhhhhhhhhhh.eeeee....hhhhhhhhhhh...eeee..............eee..eeeeeee...hhhhhhhh.......eeeee...hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhh.eee.hhhhhhhhh.............. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upy A  -1 NAMWETKFAKEGLTFDDVLLVPAKSDVLPNDVDLSVEMAPSLKLNVPIWSAGMDTITEAKMAIAIARQGGIGVVHKNMSIEQQAEEIEKVKRSGGLLAAAAVGITNDTFVRVEKLIEAGVDAIVIDTAHGHSAGVINKISEIRQTFKDVVIVAGNVATAEGARALFEVGVDIVKVGIGPGSICTTRVVAGVGVPQITAIYDCATVAREFGKTIIADGGIKYSGDIVKALAAGGNAVMLGSMLAGTDESPGETEIFQGRQFKTYRGMGSLAAMEHGKLVPEGIEGRVPYKGSVADIIFQLVGGIRSGMGYTGSPDLRHLREEAAFVRMTGAGLRESHPHDIQITKEAPNYS 486
                                     8        18        28        38        48        58        68        78        88    || 225       235       245       255       265       275       285       295       305       315       325       335       345       355       365       375       385       395    || 416       426       436       446       456       466       476       486
                                                                                                                         93|                                                                                                                                                                                400|                                                                          
                                                                                                                         221                                                                                                                                                                                 412
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UPY)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UPY)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UPY)

(-) Gene Ontology  (8, 8)

Asymmetric Unit(hide GO term definitions)

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    Gly A:279 - Asn A:280   [ RasMol ]  
 
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(-) Related Entries Specified in the PDB File

5upx THE DIFFERENT CONSTRUCT OF THE SAME PROTEIN IN THE COMPLEX WITH XMP RELATED ID: CSGID-IDP06352 RELATED DB: TARGETTRACK