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(-) Description

Title :  SWIT_4259, AN ACETOACETATE DECARBOXYLASE-LIKE ENZYME FROM SPHINGOMONAS WITTICHII RW1
 
Authors :  L. S. Mydy, N. R. Silvaggi
Date :  02 Feb 17  (Deposition) - 07 Jun 17  (Release) - 07 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.91
Chains :  Asym./Biol. Unit :  A,B,C,D
Keywords :  Acetoacetate Decarboxylase-Like Enzyme, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. S. Mydy, N. R. Silvaggi
Structural And Preliminary Functional Characterization Of Swit_4259, An Acetoacetate Decarboxylase-Like Enzyme From Sphingomonas Wittichii Rw1
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ACETOACETATE DECARBOXYLASE
    Chains: A, B, C, D
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: SWIT_4259
    Organism Scientific: SPHINGOMONAS WITTICHII
    Organism Taxid: 392499
    Strain: RW1 / DSM 6014 / JCM 10273

 Structural Features

(-) Chains, Units

  1234
Asymmetric/Biological Unit : ABCD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5UPB)

(-) Sites  (0, 0)

(no "Site" information available for 5UPB)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5UPB)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1His A:6 -Phe A:7
2His B:6 -Phe B:7
3His C:6 -Phe C:7
4His D:6 -Phe D:7

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5UPB)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5UPB)

(-) Exons   (0, 0)

(no "Exon" information available for 5UPB)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeeeeeeeeeeehhhhhhhhh....eeeeeeeeeeeeeeeeee....hhhhhhhhh.eeeeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhh...eee.eeeee................eeeeeeee..eeeeeeeeeeeee.hhhhh....eeeeeeee.........eeeeeee...eeeeeeeeeeeeeeee......hhhhhh.eeeeeeeeeeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upb A   4 ATHFLTPTGQASLVDDALYGWGADMLTVYLRCDPARLQALLPAGLKVADGLCMAYVGAFQSTSEDQPAAMLRNPAGAVYNEAALSIACTHGDRQGYFPAFVWVDKEWSLIRGWLNGYPKKIGAITLARPHPYNPVTGGLREGAVVGGICARHGFTLFRLGLTVTRAGDAGDLRSRPATFGHRHWPALHPTQTPVSELVEVNRSDLRVGDIWAGEPFIELGSAPDEALECFADHEVLAGVTYSYGFRIGGATRLESL 259
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      


Chain B from PDB  Type:PROTEIN  Length:256
                                                                                                                                                                                                                                                                                                
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..................eeeeeeeeeeeee.hhhhhhh......eeeeeeeeeeeeeeeeee....hhhhhhhhh.eeeeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhh...eee.eeeee................eeeeeeee..eeeeeeeeeeeee.hhhhh....eeeeeeee.........eeeeeeee..eeeeeeeeeeeeeeee......hhhhhh..eeeeeeeeeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upb B   4 ATHFLTPTGQASLVDDALYGWGADMLTVYLRCDPARLQALLPAGLKVADGLCMAYVGAFQSTSEDQPAAMLRNPAGAVYNEAALSIACTHGDRQGYFPAFVWVDKEWSLIRGWLNGYPKKIGAITLARPHPYNPVTGGLREGAVVGGICARHGFTLFRLGLTVTRAGDAGDLRSRPATFGHRHWPALHPTQTPVSELVEVNRSDLRVGDIWAGEPFIELGSAPDEALECFADHEVLAGVTYSYGFRIGGATRLESL 259
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253      


Chain C from PDB  Type:PROTEIN  Length:255
                                                                                                                                                                                                                                                                                               
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .................eeeeeeeeeeeee.hhhhhhh......eeeeeeeeeeeeeeeeee....hhhhhhhhh.eeeeeeeeeeeee..eeeeeeeeeee.hhhhhhhhhhh...eee.eeeee................eeeeeeee..eeeeeeeeeeeee.hhhhh....eeeeeeee.........eeeeeee.eeeeeeeeeeeeeeeeee......hhhhhh..eeeeeeeeeeeeee...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upb C   2 AGATHFLTPASLVDDALYGWGADMLTVYLRCDPARLQALLPAGLKVADGLCMAYVGAFQSTSEDQPAAMLRNPAGAVYNEAALSIACTHGDRQGYFPAFVWVDKEWSLIRGWLNGYPKKIGAITLARPHPYNPVTGGLREGAVVGGICARHGFTLFRLGLTVTRAGDAGDLRSRPATFGHRHWPALHPTQTPVSELVEVNRSDLRVGDIWAGEPFIELGSAPDEALECFADHEVLAGVTYSYGFRIGGATRLESL 259
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254     
                                   10|                                                                                                                                                                                                                                                     
                                    14                                                                                                                                                                                                                                                     


Chain D from PDB  Type:PROTEIN  Length:254
                                                                                                                                                                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....................eeeeeeeeeeeeeehhhhhhhhh....eeeeeeeeeeeeeeeeee....hhhhhhhhh.eeeeeeeeeeee...eeeeeeeeee.hhhhhhhhhhh...eee.eeeee................eeeeeeee..eeeeeeeeeeeee.hhhhh....eeeeeeee.........eeeeee..eeeeeeeeeeeeeeeee......hhhhhh.eeeeeeeeeeeeeee...eeee Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5upb D   2 AGATHFLTPTGQASLVDDALYGWGADMLTVYLRCDPARLQALLPAGLKVADGLCMAYVGAFQSTSEDQPAAMLRNPAGAVYNEAALSIACTHGRQGYFPAFVWVDKEWSLIRGWLNGYPKKIGAITLARPHPYNPVTGGLREGAVVGGICARHGFTLFRLGLTVTRAGDAGDLRSRPATFGHRHWPALHPTQTPVSELVEVRSDLRVGDIWAGEPFIELGSAPDEALECFADHEVLAGVTYSYGFRIGGATRLE 257
                                    11        21        31        41        51        61        71        81        91  ||   102       112       122       132       142       152       162       172       182       192       202||     213       223       233       243       253    
                                                                                                                       94|                                                                                                        203|                                                    
                                                                                                                        96                                                                                                         205
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5UPB)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5UPB)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5UPB)

(-) Gene Ontology  (1, 1)

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  Cis Peptide Bonds
    His A:6 - Phe A:7   [ RasMol ]  
    His B:6 - Phe B:7   [ RasMol ]  
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