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(-) Description

Title :  CRYSTAL STRUCTURE OF A 3-OXOACYL-[ACYL-CARRIER PROTEIN] REDUCTASE WITH BOUND NAD FROM BRUCELLA MELITENSIS
 
Authors :  Seattle Structural Genomics Center For Infectious Disease, Se Structural Genomics Center For Infectious Disease (Ssgcid)
Date :  27 Oct 16  (Deposition) - 09 Nov 16  (Release) - 09 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.55
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (2x)
Keywords :  Ssgcid, Brucella Melitensis, Nad, 3-Oxoacyl-[Acyl-Carrier Protein] Reductase, Structural Genomics, Seattle Structural Genomics Center For Infectious Disease, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. M. Dranow, D. D. Lorimer, T. E. Edwards
Crystal Structure Of A 3-Oxoacyl-[Acyl-Carrier Protein] Reductase With Bound Nad From Brucella Melitensis
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - SHORT-CHAIN DEHYDROGENASE/REDUCTASE SDR
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: BRMEB.00010.F.B1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: BRMEB.00010.F.B1
    Gene: BMEA_B0375
    Organism Scientific: BRUCELLA MELITENSIS BIOTYPE 2 (STRAIN ATCC 23457)
    Organism Taxid: 546272
    Strain: ATCC 23457

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 15)

Asymmetric Unit (3, 15)
No.NameCountTypeFull Name
1EDO12Ligand/Ion1,2-ETHANEDIOL
2EPE1Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
Biological Unit 1 (3, 30)
No.NameCountTypeFull Name
1EDO24Ligand/Ion1,2-ETHANEDIOL
2EPE2Ligand/Ion4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID
3NAD4Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE

(-) Sites  (15, 15)

Asymmetric Unit (15, 15)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:26 , ARG A:29 , GLY A:30 , ILE A:31 , ASP A:50 , LEU A:51 , CYS A:76 , ASP A:77 , VAL A:78 , ASN A:101 , GLY A:103 , THR A:156 , SER A:157 , TYR A:172 , LYS A:176 , PRO A:202 , GLY A:203 , ILE A:205 , THR A:207 , EDO A:304 , HOH A:454 , HOH A:461 , HOH A:483 , HOH A:492 , HOH A:515 , HOH A:537 , HOH A:548 , HOH A:550binding site for residue NAD A 301
02AC2SOFTWARESER A:158 , VAL A:159 , SER A:165 , GLY A:203 , ARG A:204 , GLN A:221 , TYR A:263 , HOH A:407binding site for residue EDO A 302
03AC3SOFTWAREPRO A:106 , ASP A:121 , GLU A:122 , HOH A:474binding site for residue EDO A 303
04AC4SOFTWARESER A:105 , TYR A:172 , NAD A:301 , HOH A:407binding site for residue EDO A 304
05AC5SOFTWAREARG A:33 , GLN A:37 , GLU A:62 , LEU A:66binding site for residue EDO A 305
06AC6SOFTWAREASN A:64 , GLY A:67 , LEU A:68 , GLY A:69 , HOH A:592binding site for residue EDO A 306
07AC7SOFTWAREVAL A:85 , ASP A:89 , ALA A:140 , HOH A:418 , HOH A:556 , HOH A:602 , ILE B:104 , ARG B:125binding site for residue EPE A 307
08AC8SOFTWAREHOH A:418 , GLY B:26 , ARG B:29 , GLY B:30 , ILE B:31 , ASP B:50 , LEU B:51 , CYS B:76 , ASP B:77 , VAL B:78 , ASN B:101 , GLY B:103 , THR B:156 , SER B:157 , SER B:158 , TYR B:172 , LYS B:176 , PRO B:202 , GLY B:203 , ARG B:204 , ILE B:205 , THR B:207 , PRO B:208 , EDO B:304 , EDO B:307 , HOH B:418 , HOH B:465 , HOH B:474 , HOH B:588binding site for residue NAD B 301
09AC9SOFTWARETRP A:116 , PRO B:143 , GLU B:147 , EDO B:303binding site for residue EDO B 302
10AD1SOFTWAREARG A:33 , GLU A:62 , HOH A:457 , VAL B:146 , ARG B:149 , EDO B:302 , HOH B:421binding site for residue EDO B 303
11AD2SOFTWARESER B:158 , VAL B:159 , SER B:165 , PRO B:202 , GLY B:203 , ARG B:204 , GLN B:221 , NAD B:301binding site for residue EDO B 304
12AD3SOFTWAREGLU A:61 , LYS B:223 , HOH B:424binding site for residue EDO B 305
13AD4SOFTWAREGLU A:147 , LYS B:107 , HOH B:456 , HOH B:477 , HOH B:537binding site for residue EDO B 306
14AD5SOFTWAREGLY B:103 , ILE B:104 , SER B:105 , NAD B:301binding site for residue EDO B 307
15AD6SOFTWAREASP B:121 , ARG B:125 , HOH B:403 , HOH B:461binding site for residue EDO B 308

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5TS3)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5TS3)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5TS3)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5TS3)

(-) Exons   (0, 0)

(no "Exon" information available for 5TS3)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:265
                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .......hhhhhh.......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhh.....eeee.............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.....hhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ts3 A   1 MELTEITPESLRLRPSHKERNVLITGAARGIGRAIAQAFVERSATVGICDLNLADVARTCEELNGLGLGRAVPIACDVSDYDALVAAIDDTGLVFDTVVNNAGISPKHNGVAHKVWEMAPDEWRRVVDVNLTGTFNTIRALTPGMVEARRGWIVNTSSVAGKTYSPIVACHYAATKSAIIGFTKHLAAELGPYSIRVNAMAPGRIATPMVAGVAPEVNAEQVKLTPMARLGQPAEVADVALWLTSTESSFVTGQTVDVAGGLYMA 265
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260     


Chain B from PDB  Type:PROTEIN  Length:262
                                                                                                                                                                                                                                                                                                      
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..........hhhhhh.......eeeee...hhhhhhhhhhhhhh..eeeeee.hhhhhhhhhhhhhh....eeeeee....hhhhhhhhhhhhh....eee..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.hhhhh......hhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeeee.......hhhhhhhhh.......hhhhhhhhhhhhhhhhhh.....eeee....... Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ts3 B  -2 HHHMELTEITPESLRLRPSHKERNVLITGAARGIGRAIAQAFVERSATVGICDLNLADVARTCEELNGLGLGRAVPIACDVSDYDALVAAIDDTGLVFDTVVNNAGISPKHNGVAHKVWEMAPDEWRRVVDVNLTGTFNTIRALTPGMVEARRGWIVNTSSVAGKTYSPIVACHYAATKSAIIGFTKHLAAELGPYSIRVNAMAPGRIATPPEVNAEQVKLTPMARLGQPAEVADVALWLTSTESSFVTGQTVDVAGGLYMA 265
                                     7        17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167       177       187       197       207||     223       233       243       253       263  
                                                                                                                                                                                                                                            208|                                                  
                                                                                                                                                                                                                                             215
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5TS3)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5TS3)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5TS3)

(-) Gene Ontology  (2, 2)

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4nbr SAME PROTEIN, BUT APO RELATED ID: SSGCID-BRMEB.00010.F RELATED DB: TARGETTRACK