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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PTS IIA PROTEIN ASSOCIATED WITH THE FUCOSE UTILIZATION OPERON FROM STREPTOCOCCUS PNEUMONIAE
 
Authors :  M. A. Higgins, A. B. Boraston
Date :  26 Aug 16  (Deposition) - 26 Oct 16  (Release) - 26 Apr 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (2x)
Biol. Unit 2:  B  (2x)
Keywords :  Pts, Transport, Transport Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Higgins, A. M. Hamilton, A. B. Boraston
Structural Characterization Of The Pts Iia And Iib Proteins Associated With Pneumococcal Fucose Utilization.
Proteins V. 85 963 2017
PubMed-ID: 28168775  |  Reference-DOI: 10.1002/PROT.25264

(-) Compounds

Molecule 1 - PTS SYSTEM, IIA COMPONENT
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Gene: SP_2164
    Organism Scientific: STREPTOCOCCUS PNEUMONIAE SEROTYPE 4 (STRAIN ATCC BAA-334 / TIGR4)
    Organism Taxid: 170187
    Strain: ATCC BAA-334 / TIGR4

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (2x): A 
Biological Unit 2 (2x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric Unit (1, 2)
No.NameCountTypeFull Name
115P2Ligand/IonPOLYETHYLENE GLYCOL (N=34)
Biological Unit 1 (1, 2)
No.NameCountTypeFull Name
115P2Ligand/IonPOLYETHYLENE GLYCOL (N=34)
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
115P2Ligand/IonPOLYETHYLENE GLYCOL (N=34)

(-) Sites  (11, 11)

Asymmetric Unit (11, 11)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
02AC2SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
03AC3SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
04AC4SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
05AC5SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
06AC6SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
07AC7SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
08AC8SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
09AC9SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
10AD1SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201
11AD2SOFTWAREHIS A:14 , PHE A:28 , SER A:79 , HOH A:356 , HIS B:14 , MET B:27 , PHE B:28 , GLY B:77 , SER B:79binding site for residues 15P A 201 and 15P B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5T3U)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5T3U)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5T3U)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5T3U)

(-) Exons   (0, 0)

(no "Exon" information available for 5T3U)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:136
                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeeeeeee.hhhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhh.eeeeeeee....hhhhhhhhhhhh....eeeee..hhhhhhhhhhh.....hhhhhhhhhhhh..hhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t3u A   2 MASFNRGILVASHGNFASGALMTAEMFVGETTNDRVRTLGLMPGENIVEFEHYFKNQVDELLDSNQEVIVLTDLIGGSPNNVALSRFLNLDSVDIVTGFNIPLLVELISSYDSKINLEEIVHNAQNSLFNVKQQLN 137
                                    11        21        31        41        51        61        71        81        91       101       111       121       131      


Chain B from PDB  Type:PROTEIN  Length:133
                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee.hhhhhhhhhhhhhhh......eeeeee....hhhhhhhhhhhhhhhhhhhh..eeeee....hhhhhhhhhhhh....eeeee..hhhhhhhhhhh.....hhhhhhhhhhhh........ Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5t3u B   4 SFNRGILVASHGNFASGALMTAEMFVGETTNDRVRTLGLMPGENIVEFEHYFKNQVDELLDSNQEVIVLTDLIGGSPNNVALSRFLNLDSVDIVTGFNIPLLVELISSYDSKINLEEIVHNAQNSLFNVKQQL 136
                                    13        23        33        43        53        63        73        83        93       103       113       123       133
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5T3U)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5T3U)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5T3U)

(-) Gene Ontology  (0, 0)

Asymmetric Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5T3U)

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