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(-) Description

Title :  CRYSTAL STRUCTURE OF THE BETA/DELTA-COPI CORE COMPLEX
 
Authors :  J. Kopp, P. Aderhold, F. Wieland, I. Sinning
Date :  12 Jan 17  (Deposition) - 28 Jun 17  (Release) - 28 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.57
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Coatomer, Copi, Beta Cop, Delta Cop, Protein Transport (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. O. Dodonova, P. Aderhold, J. Kopp, I. Ganeva, S. Rohling, W. J. Hagen I. Sinning, F. Wieland, J. A. Briggs
9 Angstrom Structure Of The Copi Coat Reveals That The Arf1 Gtpase Occupies Two Contrasting Molecular Environments.
Elife V. 6 2017
PubMed-ID: 28621666  |  Reference-DOI: 10.7554/ELIFE.26691

(-) Compounds

Molecule 1 - COATOMER SUBUNIT BETA
    Chains: A
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: CTHT_0034860
    Organism Scientific: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM 1495
    Organism Taxid: 759272
    Synonym: BETA-COAT PROTEIN
 
Molecule 2 - COATOMER SUBUNIT DELTA-LIKE PROTEIN
    Chains: B
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: CTHT_0026330
    Organism Scientific: CHAETOMIUM THERMOPHILUM VAR. THERMOPHILUM DSM 1495
    Organism Taxid: 759272

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5MU7)

(-) Sites  (0, 0)

(no "Site" information available for 5MU7)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MU7)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MU7)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MU7)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MU7)

(-) Exons   (0, 0)

(no "Exon" information available for 5MU7)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:371
                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhh....hhhhhhhhhhhhhhh..........hhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhh.hhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhh...hhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhh.hhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mu7 A  20 PTLQELKTQLEKGNDETKIETMKRILTIMLNGDPLHGLLMHIIRFVMPSKSKPLKKLLYFYYEICPKLDSQGKLKQEFILVCNGIRNDLQHPNEYIRGNTLRFLCKLREPELLEPLLSSVRACLEHRHAYVRKNAVFAVASIYQHAPSLIPDAADLIATFLEGESDPTCKRNGFAALSSISHDKALSYLGTVFEGIPNAEELLQLVEIEFIRKDALHNPQNKPRYLRLIFDLLEANTSTVVYEAASSLTALTNNPVAVKAAAGKFIELAIKEADNNVKLIVLDRVDQLRQKNEGILDDLIMEILRVLSSPDIDVRRKALEIALEMVSSKNVEEVVLLLKKELSKTVEQEYEKNSEYRQLLIHSIHQCAVKF 390
                                    29        39        49        59        69        79        89        99       109       119       129       139       149       159       169       179       189       199       209       219       229       239       249       259       269       279       289       299       309       319       329       339       349       359       369       379       389 


Chain B from PDB  Type:PROTEIN  Length:150
                                                                                                                                                                                      
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .eeeeeeee....eeeeee....hhhhhhhhhhhhhhhhhh.....eeee..eeeeeeee..eeeeeeee...hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhee..ee...hhhhhhhhhhh.hhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5mu7 B   2 VVLAASICTRGGKAVLARAFHDIKRSRVEALLASFPKAANSGTQHTTVEQDNVRFVYQPLDELYMVLITNKQSNILQDIDTLHLFAQVVTNTCRTLEEREILRNAYELISAFDEIINLGYRENLTINQIKTFLEMESHEERIQEIIARNK 151
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MU7)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MU7)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MU7)

(-) Gene Ontology  (14, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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