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(-) Description

Title :  CYANOTHECE LIPOXYGENASE 2 (CSPLOX2) VARIANT - L304V
 
Authors :  J. Newie, P. Neumann, M. Werner, R. A. Mata, R. Ficner, I. Feussner
Date :  14 Nov 16  (Deposition) - 31 May 17  (Release) - 31 May 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.50
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Linoleate 11-Lipoxygenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Newie, P. Neumann, M. Werner, R. A. Mata, R. Ficner, I. Feussner
Lipoxygenase 2 From Cyanothece Sp. Controls Dioxygen Insertion By Steric Shielding And Substrate Fixation.
Sci Rep V. 7 2069 2017
PubMed-ID: 28522865  |  Reference-DOI: 10.1038/S41598-017-02153-W

(-) Compounds

Molecule 1 - ARACHIDONATE 15-LIPOXYGENASE
    Chains: A, B
    EC Number: 1.13.11.33
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PET28A
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: RESIDUES 1-569
    Gene: PCC8801_3106
    Mutation: YES
    Organism Scientific: CYANOTHECE SP. (STRAIN PCC 8801)
    Organism Taxid: 41431

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 14)

Asymmetric/Biological Unit (4, 14)
No.NameCountTypeFull Name
1FE2Ligand/IonFE (III) ION
2GOL4Ligand/IonGLYCEROL
3IMD6Ligand/IonIMIDAZOLE
4MES2Ligand/Ion2-(N-MORPHOLINO)-ETHANESULFONIC ACID

(-) Sites  (14, 14)

Asymmetric Unit (14, 14)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:257 , HIS A:262 , HIS A:449 , ASN A:453 , ILE A:569 , HOH A:1137binding site for residue FE A 1001
02AC2SOFTWAREARG A:103 , ILE A:486 , ASN B:425 , GLU B:427 , ASN B:429binding site for residue GOL A 1002
03AC3SOFTWAREGLY A:172 , ARG A:173 , ASP A:312 , THR A:318 , LEU A:319 , HOH A:1117 , HOH A:1132binding site for residue GOL A 1003
04AC4SOFTWARELYS A:141 , ILE A:228 , THR A:230 , ARG A:232 , ASP A:233binding site for residue MES A 1004
05AC5SOFTWAREARG A:57 , GLN A:303 , THR A:505 , HOH A:1145binding site for residue IMD A 1005
06AC6SOFTWAREHIS B:257 , HIS B:262 , HIS B:449 , ASN B:453 , ILE B:569binding site for residue FE B 1001
07AC7SOFTWARETHR A:68 , LEU A:69 , SER A:71 , ILE A:73 , THR B:68 , LEU B:69 , SER B:71 , ASN B:72 , ILE B:73binding site for residue GOL B 1002
08AC8SOFTWAREVAL A:62 , ALA A:66 , LEU A:69 , ALA B:497 , GLU B:501binding site for residue GOL B 1003
09AC9SOFTWAREARG B:173 , ASP B:312 , THR B:318 , LEU B:319 , HOH B:1132binding site for residue IMD B 1005
10AD1SOFTWAREASP B:458 , CYS B:507binding site for residue IMD B 1006
11AD2SOFTWAREILE B:255 , ARG B:260 , ALA B:329 , GLU B:332binding site for residue IMD B 1007
12AD3SOFTWAREARG B:57 , GLN B:303 , VAL B:304 , THR B:505 , HOH B:1140binding site for residue IMD B 1009
13AD4SOFTWARELYS B:141 , ILE B:142 , ILE B:228 , TYR B:229 , THR B:230 , PRO B:231 , ARG B:232 , GLY B:234 , LYS B:235 , HIS B:236 , LYS B:477binding site for Di-peptide MES B 1004 and ASP B 233
14AD5SOFTWARETYR B:510 , THR B:556 , LEU B:559 , PRO B:560 , SER B:561 , VAL B:563binding site for Di-peptide IMD B 1008 and ASN B 562

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5MEE)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5MEE)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5MEE)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5MEE)

(-) Exons   (0, 0)

(no "Exon" information available for 5MEE)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:569
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhh..............hhhhhhhhhhhh......ee...........hhhhhhhhhh...hhhhhhhh..eeeee.hhhh.....eeeeee..eeeeee......eeeeeee.........eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mee A   1 MVQPSLPQDDTPDQQEQRNRAIAQQREAYQYSETAGILLIKTLPQSEMFSLKYLIERDKGLVSLIANTLASNIENIFDPFDKLEDFEEMFPLLPKPLVMNTFRNDRVFARQRIAGPNPMVIERVVDKLPDNFPVTDAMFQKIMFTKKTLAEAIAQGKLFITNYKGLAELSPGRYEYQKNGTLVQKTKTIAAPLVLYAWKPEGFGDYRGSLAPIAIQINQQPDPITNPIYTPRDGKHWFIAKIFAQMADGNCHEAISHLARTHLILEPFVLATANELAPNHPLSVLLKPHFQFTLAINELAREQVISAGGYADDLLAGTLEASIAVIKAAIKEYMDNFTEFALPRELARRGVGIGDVDQRGENFLPDYPYRDDAMLLWNAIEVYVRDYLSLYYQSPVQIRQDTELQNWVRRLVSPEGGRVTGLVSNGELNTIEALVAIATQVIFVSGPQHAAVNYPQYDYMAFIPNMPLATYATPPNKESNISEATILNILPPQKLAARQLELMRTLCVFYPNRLGYPDTEFVDVRAQQVLHQFQERLQEIEQRIVLCNEKRLEPYTYLLPSNVPNSTSI 569
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520       530       540       550       560         


Chain B from PDB  Type:PROTEIN  Length:565
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhhh.eeee..eeee...hhhhh.hhhhhhhhhhhhhhhhhhhhhh...........hhhhhhh..............hhhhhhhhhhhh......ee...........hhhhhhhhhh...hhhhhhhh..eeeee.hhhh.....eeeee....eeeee......eeeeeee.....eeeeeeee...........eehhhhhhhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhh....hhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.................hhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhh................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhh.hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhh...... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5mee B   1 MVQPSLPQDDTPDQQEQRNRAIAQQREAYQYSETAGILLIKTLPQSEMFSLKYLIERDKGLVSLIANTLASNIENIFDPFDKLEDFEEMFPLLPKPLVMNTFRNDRVFARQRIAGPNPMVIERVVDKLPDNFPVTDAMFQKIMFTKKTLAEAIAQGKLFITNYKGLAELSPGRYEYQKNGTLVQKTKTIAAPLVLYAWKPEGRGSLAPIAIQINQQPDPITNPIYTPRDGKHWFIAKIFAQMADGNCHEAISHLARTHLILEPFVLATANELAPNHPLSVLLKPHFQFTLAINELAREQVISAGGYADDLLAGTLEASIAVIKAAIKEYMDNFTEFALPRELARRGVGIGDVDQRGENFLPDYPYRDDAMLLWNAIEVYVRDYLSLYYQSPVQIRQDTELQNWVRRLVSPEGGRVTGLVSNGELNTIEALVAIATQVIFVSGPQHAAVNYPQYDYMAFIPNMPLATYATPPNKESNISEATILNILPPQKLAARQLELMRTLCVFYPNRLGYPDTEFVDVRAQQVLHQFQERLQEIEQRIVLCNEKRLEPYTYLLPSNVPNSTSI 569
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200 ||    214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564     
                                                                                                                                                                                                                                   202|                                                                                                                                                                                                                                                                                                                                                                          
                                                                                                                                                                                                                                    207
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5MEE)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5MEE)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5MEE)

(-) Gene Ontology  (5, 5)

Asymmetric/Biological Unit(hide GO term definitions)

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