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(-) Description

Title :  THE STRUCTURE OF THCOX, THE FIRST OXIDASE PROTEIN FROM THE CYANOBACTIN PATHWAYS
 
Authors :  A. F. Bent, A. Wagner, J. H. Naismith
Date :  16 Aug 16  (Deposition) - 09 Nov 16  (Release) - 23 Nov 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Cyanobactins Oxidase S-Sad Ripps, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. F. Bent, G. Mann, W. E. Houssen, V. Mykhaylyk, R. Duman, L. Thomas, M. Jaspars, A. Wagner, J. H. Naismith
Structure Of The Cyanobactin Oxidase Thcox From Cyanothece Sp. Pcc 7425, The First Structure To Be Solved At Diamond Light Source Beamline I23 By Means Of S-Sad.
Acta Crystallogr D Struct V. 72 1174 2016 Biol
PubMed-ID: 27841750  |  Reference-DOI: 10.1107/S2059798316015850

(-) Compounds

Molecule 1 - CYAGOX
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Gene: CYAN7425_0520
    Organism Scientific: CYANOTHECE SP. (STRAIN PCC 7425 / ATCC 29141)
    Organism Taxid: 395961
    Strain: PCC 7425 / ATCC 29141
 
Molecule 2 - CYAGOX
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 DE3
    Expression System Taxid: 469008
    Gene: CYAN7425_0520
    Organism Scientific: CYANOTHECE SP. (STRAIN PCC 7425 / ATCC 29141)
    Organism Taxid: 395961
    Strain: PCC 7425 / ATCC 29141

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1FMN2Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREARG A:278 , SER A:280 , ARG A:282 , ALA A:380 , THR A:381 , TYR A:424 , SER A:435 , ALA A:436 , ILE A:437 , GLY A:438 , PRO B:326 , SER B:327 , GLY B:328 , ALA B:330 , LEU B:411binding site for residue FMN A 901
2AC2SOFTWAREPRO A:326 , SER A:327 , GLY A:328 , LEU A:411 , LYS A:414 , ARG B:278 , SER B:280 , ARG B:282 , ALA B:380 , THR B:381 , TYR B:424 , SER B:435 , ALA B:436 , ILE B:437 , GLY B:438binding site for residue FMN B 901

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5LQ4)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Leu A:91 -Pro A:92
2Leu B:91 -Pro B:92

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5LQ4)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5LQ4)

(-) Exons   (0, 0)

(no "Exon" information available for 5LQ4)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:457
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee....eeee...eeeee....eeeee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...eeeee..........hhhhhh.eeee....eeee....eeee.....eeeee.hhhhhhhhhhhhhh...eehhhhhhhhhhhh..hhhhhhhhhhhhhhh..ee...........hhhhhhhhhhhh......................ee....hhhhhhhhh.hhhhhhhhh...........hhhhhhhhhhhhhh..eeee.........eeee...........eeeeeee........eeeeee....eeeeeee.hhhhhhhhhhhhhhh.......eeeeeeee.hhh......hhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhh......eeeeeeeeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lq4 A   3 DLFTLSFSPDLSIASEAEQLTLQSKDDRLILEHPQPGLRTALEQLKQGNLTLAQLTELVSEQDGVEAGITFASELEKLVDLGWICHSVLPLITAIPIAKDYELNVPDSSWQTTAIALSRFAFLHQDLQQLVLESPRSKSKLVILDWRVGAVIAKLAQSDRGFIFATSADSLLADLSLELEELKRLFALLIATQMMDLEPEDETITQWKFHNLLFHHYTRLLPVFEHRDRYPYVKPVISTQAIPLVKPDLTALATTDMTLTEAIETRRSIREYSDQPITLAQLGEFLYRCARVKAVYTLPEDPMQVGESTTRPYPSGGALYELEIYPLVHQCGDLAAGLYHYQPLSHTLHPVADWTPEVESLVYDAWRATGQQSIPQIVLIITARFGRLFWKYHDIAYSLILKHVGVLYQTFYLVATAMQLAPSAIGAGNTTKFCQIAGLNPDEEASVGEFSLGAAKP 469
                                    12        22        32        42        52        62        72        82        92       102       112       122       132       142       152       162       172       182       192       202       212       222|      242       252       262       272       282       292       302       312       322       332       342       352       362       372       382       392       402       412       422       432       442       452       462       
                                                                                                                                                                                                                                                     222|                                                                                                                                                                                                                                            
                                                                                                                                                                                                                                                      233                                                                                                                                                                                                                                            


Chain B from PDB  Type:PROTEIN  Length:465
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeee....eeee...eeeee....eeeee..hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee...eeeee..........hhhhhh.eeee....eeee....eeee.....eeeee.hhhhhhhhhhhhhh...eehhhhhhhhhhhh..hhhhhhhhhhhhhhh..ee...........hhhhhhhhhhhh........................ee....hhhhhhhhh.hhhhhhhhh...........hhhhhhhhhhhhhh..eeee.........eeee...........eeeeeee........eeeeee....eeeeeee.hhhhhhhhhhhhhhh.......eeeeeeee.hhh......hhhhhhhhhhhhhhhhhhhhhhhh.eeeeee...hhhhhhhhh......eeeeeeeeeee....... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5lq4 B   1 MLDLFTLSFSPDLSIASEAEQLTLQSKDDRLILEHPQPGLRTALEQLKQGNLTLAQLTELVSEQDGVEAGITFASELEKLVDLGWICHSVLPLITAIPIAKDYELNVPDSSWQTTAIALSRFAFLHQDLQQLVLESPRSKSKLVILDWRVGAVIAKLAQSDRGFIFATSADSLLADLSLELEELKRLFALLIATQMMDLEPEDETITQWKFHNLLFHHYTRLLNLPVFEHRDRYPYVKPVISTQAIPLVKPDLTALATTDMTLTEAIETRRSIREYSDQPITLAQLGEFLYRCARVKAVYTLPEDPMQVGESTTRPYPSGGALYELEIYPLVHQCGDLAAGLYHYQPLSHTLHPVADWTPEVESLVYDAWRATGQQSIPQIVLIITARFGRLFWKYHDIAYSLILKHVGVLYQTFYLVATAMQLAPSAIGAGNTTKFCQIAGLNPDEEASVGEFSLGAAKPQQQS 473
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220 ||    238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468     
                                                                                                                                                                                                                                                       222|                                                                                                                                                                                                                                                  
                                                                                                                                                                                                                                                        231
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5LQ4)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5LQ4)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5LQ4)

(-) Gene Ontology  (2, 2)

Asymmetric/Biological Unit(hide GO term definitions)

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