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(-) Description

Title :  AN IRON-BOUND STRUCTURE OF THE SALICYLATE SYNTHASE IRP9
 
Authors :  K. M. Meneely, A. L. Lamb
Date :  13 May 16  (Deposition) - 20 Jul 16  (Release) - 10 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.16
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Chorismate, Isochorismate, Isomerase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  K. M. Meneely, J. A. Sundlov, A. M. Gulick, G. R. Moran, A. L. Lamb
An Open And Shut Case: The Interaction Of Magnesium With Ms Enzymes.
J. Am. Chem. Soc. V. 138 9277 2016
PubMed-ID: 27373320  |  Reference-DOI: 10.1021/JACS.6B05134

(-) Compounds

Molecule 1 - PUTATIVE SALICYLATE SYNTHETASE
    Atcc: 9610
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21 STAR (DE3) PLYSS
    Expression System Taxid: 511693
    Gene: YBTS, YE2612
    Organism Taxid: 393305
    Strain: NCTC 13174 / 8081

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 6)

Asymmetric Unit (3, 6)
No.NameCountTypeFull Name
1ACT3Ligand/IonACETATE ION
2FE22Ligand/IonFE (II) ION
3SO41Ligand/IonSULFATE ION
Biological Unit 1 (2, 3)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2FE21Ligand/IonFE (II) ION
3SO4-1Ligand/IonSULFATE ION
Biological Unit 2 (3, 3)
No.NameCountTypeFull Name
1ACT1Ligand/IonACETATE ION
2FE21Ligand/IonFE (II) ION
3SO41Ligand/IonSULFATE ION

(-) Sites  (6, 6)

Asymmetric Unit (6, 6)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:280 , GLU A:284 , GLU A:420 , ACT A:503binding site for residue FE2 A 501
2AC2SOFTWARETYR A:372 , LEU A:390 , ARG A:391 , ALA A:404 , GLY A:405 , LYS A:424 , HOH A:634binding site for residue ACT A 502
3AC3SOFTWAREALA A:256 , GLY A:257 , THR A:258 , GLU A:284 , GLY A:407 , GLU A:420 , LYS A:424 , FE2 A:501binding site for residue ACT A 503
4AC4SOFTWAREGLU B:284 , GLU B:420 , SO4 B:502 , HOH B:602 , HOH B:606binding site for residue FE2 B 501
5AC5SOFTWAREALA B:256 , GLY B:257 , THR B:258 , GLU B:284 , GLY B:407 , GLU B:420 , LYS B:424 , FE2 B:501 , HOH B:607binding site for residue SO4 B 502
6AC6SOFTWARETYR B:372 , LEU B:390 , ARG B:391 , ALA B:404 , GLY B:405 , HOH B:638binding site for residue ACT B 503

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5JY9)

(-) Cis Peptide Bonds  (6, 6)

Asymmetric Unit
No.Residues
1Gln A:38 -Pro A:39
2Lys A:132 -Gly A:133
3Phe A:344 -Pro A:345
4Ile A:352 -Pro A:353
5Gln B:38 -Pro B:39
6Ile B:352 -Pro B:353

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5JY9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5JY9)

(-) Exons   (0, 0)

(no "Exon" information available for 5JY9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:401
                                                                                                                                                                                                                                                                                                                                                                                                                                                 
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhh....eeeeee..eeeeee...eeeee......eeeee..eeeee...hhhhhhhhhhh........eeeee..hhhhhhhh..........eeeee..eeeeee....eee..........hhhhhhhhhhhhhhhhhh....eeeeeeeee.....hhhhhhhhhhhh....eeeeeee..eeeeeee..eeeeee..eeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhh.hhhh.eehhhhhhhhhhhhh.........eeeee....eeeee...eeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jy9 A   5 EFLHWLPTISGVLRQFAEEECYVYERQPCWYLGKGCQARLHINADGTQATFIDDAGEQKWAVDSIADCARRFMAHPQVKGRRVYGQVGFNFAAHARGIAFNAGEWPLLTLTVPREELIFEKGNVTVYAAPLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNAIMQIEKTPRELYSGAILLLDDTRFDAALVLRSVFQDSQRCWIQAGAGIIAQSTPERELTETREKLASIAPYLMV 434
                               ||   21        31        41        51        61        71        81        91       101       111       121       131       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373       383       393       403       413       423       433 
                               8|                                                                                                                        139|                                                                                                                                                                                                                                                                                
                               16                                                                                                                         162                                                                                                                                                                                                                                                                                


Chain B from PDB  Type:PROTEIN  Length:424
                                                                                                                                                                                                                                                                                                                                                                                                                                                                        
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.hhhhhhhhhhhhhhhh....eeeeee..eeeeee...eeeee......eeeee..eeeee...hhhhhhhhhhhh.......eeeee..hhhhhhh...........eeeee..eeeeee..eeeeee.hhhhhhhhhhhh..ee.......hhhhhhhhhhhhhhhhhh....eeeeeeeee.....hhhhhhhhhhhh....eeeeeee..eeeeeee..eeeeee..eeee..eeeeee...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......eeeeeeeeeee..eeeeeeeeeee.....hhhhhhhhhhhhhh..eehhhhhhhhhhhhh.........eeeee...eeeeee...eeee....eeeeeeeee....hhhhhhhhhhhhhhhhhhh.ee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jy9 B   2 KISEFLHLPEEQWLPTISGVLRQFAEEECYVYERQPCWYLGKGCQARLHINADGTQATFIDDAGEQKWAVDSIADCARRFMAHPQVKGRRVYGQVGFNFAAHARGIAFNAGEWPLLTLTVPREELIFEKGNVTVYADSADGCRRLCEWVKNAPLAVDTALNGEAYKQQVARAVAEIRRGEYVKVIVSRAIPLPSRIDMPATLLYGRQANTPVRSFMFRQEGREALGFSPELVMSVTGNKVVTEPLAGTRDRMGNPEHNKAKEAELLHDSKEVLEHILSVKEAIAELEAVCLPGSVVVEDLMSVRQRGSVQHLGSGVSGQLAENKDAWDAFTVLFPSITASGIPKNAALNAIMQIEKTPRELYSGAILLLDDTRFDAALVLRSVFQDSQRCWIQAGAGIIAQSTPERELTETREKLASIAPYLMV 434
                                   |13        23        33        43        53        63        73        83        93       103       113       123       133       143       153|      170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430    
                                   9|                                                                                                                                          153|                                                                                                                                                                                                                                                                                 
                                   12                                                                                                                                           161
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5JY9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5JY9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5JY9)

(-) Gene Ontology  (3, 3)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

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(-) Related Entries Specified in the PDB File

5jxz 5jy4 5jy8