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(-) Description

Title :  STRUCTURE OF A BETA-1,4-MANNANASE, SSGH134.
 
Authors :  Y. Jin, M. Petricevic, E. D. Goddard-Borger, S. J. Williams, G. J. Davie
Date :  09 May 16  (Deposition) - 16 Nov 16  (Release) - 18 Jan 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.09
Chains :  Asym./Biol. Unit :  A
Keywords :  Beta-1, 4-Mannanase, Carbohydrate Degrading, Glycosyl Hydrolase, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Jin, M. Petricevic, A. John, L. Raich, H. Jenkins, L. Portela De Souza, F. Cuskin, H. J. Gilbert, C. Rovira, E. D. Goddard-Borger, S. J. Williams, G. J. Davies
A Beta-Mannanase With A Lysozyme-Like Fold And A Novel Molecular Catalytic Mechanism.
Acs Cent Sci V. 2 896 2016
PubMed-ID: 28058278  |  Reference-DOI: 10.1021/ACSCENTSCI.6B00232

(-) Compounds

Molecule 1 - BETA-1,4-MANNANASE
    Chains: A
    EC Number: 3.2.1.78
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PHISMALP
    Expression System Taxid: 469008
    Expression System Variant: CODON PLUS
    Organism Scientific: STREPTOMYCES SP. NRRL B-244
    Organism Taxid: 1931
    Strain: NRRL B-24484

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 5)

Asymmetric/Biological Unit (3, 5)
No.NameCountTypeFull Name
1CL1Ligand/IonCHLORIDE ION
2EDO1Ligand/Ion1,2-ETHANEDIOL
3GOL3Ligand/IonGLYCEROL

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:59 , ALA A:63 , ASN A:65 , HIS A:124 , EDO A:204 , HOH A:310 , HOH A:312 , HOH A:333binding site for residue GOL A 201
2AC2SOFTWARETHR A:46 , GLU A:47 , ARG A:48 , ASP A:50 , TYR A:53 , HOH A:336 , HOH A:394binding site for residue GOL A 202
3AC3SOFTWAREGLU A:47 , ARG A:48 , LEU A:74 , ASN A:126 , GLY A:127 , ALA A:128 , SER A:129 , HOH A:312 , HOH A:318 , HOH A:332 , HOH A:387binding site for residue GOL A 203
4AC4SOFTWAREGLU A:45 , ASN A:65 , LYS A:70 , HIS A:124 , ARG A:125 , TYR A:142 , GOL A:201binding site for residue EDO A 204
5AC5SOFTWAREGLN A:71 , ASN A:72 , MET A:75 , HIS A:124 , HOH A:342binding site for residue CL A 205

(-) SS Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1A:8 -A:14

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:165
                                                                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ......eeeee..hhhhhhhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhh.ee....eehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhh..eeeee.... Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5jts A   8 CPSGATCGSYTVGGLGSRKQQVRNAGGSSLDLAVAMLETERMDTAYPYGDNKSGDAANFGIFKQNWLMLRSACAQFGGQGAGQYDNGAALNSSLGQDVSCLHQSQSHYGLDAWFAGHRNGASGLSSPNTADIAAYKAAVYWIKAQLDADSANLGNDTRFWVQVPA 172
                                    17        27        37        47        57        67        77        87        97       107       117       127       137       147       157       167
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

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(-) Pfam Domains  (0, 0)

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(-) Gene Ontology  (0, 0)

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