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(-) Description

Title :  ALCOHOL OXIDASE FROM PICHIA PASTORIS
 
Authors :  J. Vonck, D. J. Mills, D. N. Parcej
Date :  16 Feb 16  (Deposition) - 03 Aug 16  (Release) - 28 Sep 16  (Revision)
Method :  ELECTRON MICROSCOPY
Resolution :  3.37
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (8x)
Keywords :  Alcohol Oxidase Peroxisome, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Vonck, D. N. Parcej, D. J. Mills
Structure Of Alcohol Oxidase From Pichia Pastoris By Cryo-Electron Microscopy.
Plos One V. 11 59476 2016
PubMed-ID: 27458710  |  Reference-DOI: 10.1371/JOURNAL.PONE.0159476

(-) Compounds

Molecule 1 - ALCOHOL OXIDASE 1
    Chains: A
    EC Number: 1.1.3.13
    Organism Common: YEAST
    Organism Scientific: KOMAGATAELLA PASTORIS
    Organism Taxid: 4922
    Synonym: AOX 1,METHANOL OXIDASE 1,MOX 1

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (8x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric Unit (2, 2)
No.NameCountTypeFull Name
1FAD1Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MG1Ligand/IonMAGNESIUM ION
Biological Unit 1 (1, 8)
No.NameCountTypeFull Name
1FAD8Ligand/IonFLAVIN-ADENINE DINUCLEOTIDE
2MG-1Ligand/IonMAGNESIUM ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:568binding site for residue MG A 701
2AC2SOFTWAREGLY A:13 , GLY A:14 , GLY A:15 , SER A:16 , SER A:17 , GLU A:38 , ALA A:39 , MET A:59 , ALA A:87 , ASN A:88 , VAL A:89 , GLY A:92 , GLY A:93 , ILE A:96 , ASN A:97 , PHE A:98 , MET A:99 , MET A:100 , LYS A:226 , VAL A:227 , CYS A:268 , GLY A:269 , SER A:272 , TRP A:566 , LEU A:606 , ASN A:616 , THR A:617 , TYR A:618binding site for residue FAD A 702

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5I68)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Arg A:330 -Gly A:331

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5I68)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5I68)

(-) Exons   (0, 0)

(no "Exon" information available for 5I68)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:662
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeeee..hhhhhhhhhhhhhhhh...eeee........hhhhhhhhhhhhhhh........ee...hhhhh....ee......hhhhhh........hhhhhhhh.....hhhhhhhhhhh.eee...............eee.......hhhhhhhhhhhh..................ee.............hhhhhhhhhhhhhh..eeee..eee...........eeeeee...........eeeeeeeeeee.hhhhhhhhhhhhh...hhhhhhh.............eee...eeeeeeeee.....hhhhh.....hhhhhhhhhhhhh..hhhhh..eeeeeee..hhhhhh..hhhhhhhhhhhh........eeeeee.....hhhhh....eeeeeeee......eeee..........eee.....hhhhhhhhhhhhhhhhhhhh....eeee.hhhh..............hhhhhhhhhh.........................................hhhhhhhhhhhhhhhhee....................................eee.hhhhh.......hhhhhhhhhhhhhhhhhhhh........................... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5i68 A   2 AIPEEFDILVLGGGSSGSCIAGRLANLDHSLKVGLIEAGENNLNNPWVYLPGIYPRNMKLDSKTASFYTSNPSPHLNGRRAIVPCANVLGGGSSINFMMYTRGSASDYDDFQAEGWKTKDLLPLMKKTETYQRACNNPDIHGFEGPIKVSFGNYTYPVCQDFLRASESQGIPYVDDLEDLVTAHGAEHWLKWINRDTGRRSDSAHAFVHSTMRNHDNLYLICNTKVDKIIVEDGRAAAVRTVPSKPLNPKKPSHKIYRARKQIVLSCGTISSPLVLQRSGFGDPIKLRAAGVKPLVNLPGVGRNFQDHYCFFSPYRIKPQYESFDDFVRGDAEIQKRVFDQWYANGTGPLATNGIEAGVKIRPTPEELSQMDESFQEGYREYFEDKPDKPVMHYSIIAGFFGDHTKIPPGKYMTMFHFLEYPFSRGSIHITSPDPYAAPDFDPGFMNDERDMAPMVWAYKKSRETARRMDHFAGEVTSHHPLFPYSSEARALEMDLETSNAYGGPLNLSAGLAHGSWTQPLKKPTAKNEGHVTSNQVELHPDIEYDEEDDKAIENYIREHTETTWHCLGTCSIGPREGSKIVKWGGVLDHRSNVYGVKGLKVGDLSVCPDNVGCNTYTTALLIGEKTATLVGEDLGYSGEALDMTVPQFKLGTYEKTGLARF 663
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       251       261       271       281       291       301       311       321       331       341       351       361       371       381       391       401       411       421       431       441       451       461       471       481       491       501       511       521       531       541       551       561       571       581       591       601       611       621       631       641       651       661
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5I68)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5I68)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5I68)

(-) Gene Ontology  (9, 18)

Asymmetric Unit(hide GO term definitions)

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        ALOX1_KOMPC | F2QY27: 5hsa

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