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(-) Description

Title :  1.65 ANGSTROM RESOLUTION CRYSTAL STRUCTURE OF LMO0182 (RESIDUES 1-245) FROM LISTERIA MONOCYTOGENES EGD-E
 
Authors :  A. S. Halavaty, S. H. Light, G. Minasov, S. Grimshaw, K. Kwon, W. F. Ander Center For Structural Genomics Of Infectious Diseases (Csgi
Date :  19 Jan 16  (Deposition) - 01 Feb 17  (Release) - 01 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.65
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Lmo0182, Center For Structural Genomics Of Infectious Diseases, Csgid, Listeria Monocytogenes Egd-E, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  S. H. Light, L. A. Cahoon, K. V. Mahasenan, M. Lee, B. Boggess, A. S. Halavaty, S. Mobashery, N. E. Freitag, W. F. Anderson
Transferase Versus Hydrolase: The Role Of Conformational Flexibility In Reaction Specificity.
Structure 2017
PubMed-ID: 28089449  |  Reference-DOI: 10.1016/J.STR.2016.12.007

(-) Compounds

Molecule 1 - LMO0182 PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PMCSG53
    Expression System Strain: BL21(DE3)-MAGIC
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: LMO0182
    Mutation: YES
    Organism Scientific: LISTERIA MONOCYTOGENES SEROVAR 1/2A (STRAIN ATCC BAA-679 / EGD-E)
    Organism Taxid: 169963
    Strain: ATCC BAA-679 / EGD-E

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 20)

Asymmetric/Biological Unit (2, 20)
No.NameCountTypeFull Name
1ACT2Ligand/IonACETATE ION
2MSE18Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREILE A:77 , ASN A:187 , ASP A:221 , HOH A:576binding site for residue ACT A 301
2AC2SOFTWAREILE B:77 , ASN B:187 , ASP B:221 , HOH B:520binding site for residue ACT B 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HOP)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Phe A:104 -Pro A:105
2Leu A:148 -Pro A:149
3Phe B:104 -Pro B:105
4Leu B:148 -Pro B:149

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HOP)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HOP)

(-) Exons   (0, 0)

(no "Exon" information available for 5HOP)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhee..ee.........hhhhhhhh.........hhhhhhhhhhhhhhhee..ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hop A   1 mSKFTKLmQGYLHLIEGKNEKIKPILLETKPNFTTDSVLETASWLWLSSKINHYDREEVEPVIAFLVENWNRPEKSIWGSAENDIYLATISSVYSALLDVKNTFPKPELQQTITIIRDYCFDNLLKGDSILTGFNTRKVSTDQLLSVLPFGLFSPEDLVmVAAVGKmEQQLVQDDGVLPYSGAPRVNSFATALmALYFLEKSDQDKALHYLNmAmKmEDNDELGAIFIEINQAFRAmES 239
                            |      |10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      |170       180       190   |   200       210  | | |220       230      |  
                            |      8-MSE                                                                                                                                                 160-MSE  |                        194-MSE            213-MSE                 237-MSE
                            1-MSE                                                                                                                                                               167-MSE                                         215-MSE                    
                                                                                                                                                                                                                                                  217-MSE                  


Chain B from PDB  Type:PROTEIN  Length:239
                                                                                                                                                                                                                                                                               
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhh.hhhhhhhhhhhh.......hhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhee..ee.........hhhhhhhh.........hhhhhhhhhhhhhhhee..ee.........hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hop B   1 mSKFTKLmQGYLHLIEGKNEKIKPILLETKPNFTTDSVLETASWLWLSSKINHYDREEVEPVIAFLVENWNRPEKSIWGSAENDIYLATISSVYSALLDVKNTFPKPELQQTITIIRDYCFDNLLKGDSILTGFNTRKVSTDQLLSVLPFGLFSPEDLVmVAAVGKmEQQLVQDDGVLPYSGAPRVNSFATALmALYFLEKSDQDKALHYLNmAmKmEDNDELGAIFIEINQAFRAmES 239
                            |      |10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160      |170       180       190   |   200       210  | | |220       230      |  
                            |      8-MSE                                                                                                                                                 160-MSE  |                        194-MSE            213-MSE                 237-MSE
                            1-MSE                                                                                                                                                               167-MSE                                         215-MSE                    
                                                                                                                                                                                                                                                  217-MSE
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HOP)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HOP)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HOP)

(-) Gene Ontology  (7, 7)

Asymmetric/Biological Unit(hide GO term definitions)

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