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(-) Description

Title :  STRUCTURE OF B. MEGATERIUM NFRA1
 
Authors :  A. Vigouroux, S. Morera
Date :  05 Jan 16  (Deposition) - 06 Apr 16  (Release) - 01 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.89
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Nitroreductase Enzyme, Dimer, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  L. Carles, P. Besse-Hoggan, M. Joly, A. Vigouroux, S. Morera, I. Batisson
Functional And Structural Characterization Of Two Bacillus Megaterium Nitroreductases Biotransforming The Herbicide Mesotrione.
Biochem. J. V. 473 1443 2016
PubMed-ID: 27005432  |  Reference-DOI: 10.1042/BJ20151366

(-) Compounds

Molecule 1 - NFRA1
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PEXP5-CT/TOPO
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Variant: STAR PLYSS
    Gene: NFRA1
    Organism Scientific: BACILLUS MEGATERIUM
    Organism Taxid: 1404
    Other Details: FMN

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 5)

Asymmetric/Biological Unit (2, 5)
No.NameCountTypeFull Name
1EDO3Ligand/Ion1,2-ETHANEDIOL
2FMN2Ligand/IonFLAVIN MONONUCLEOTIDE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREHIS A:11 , ARG A:12 , SER A:13 , ARG A:15 , GLN A:67 , TYR A:69 , CYS A:133 , TYR A:134 , ILE A:135 , GLY A:136 , GLY A:137 , LYS A:173 , ARG A:175 , HOH A:537 , HOH A:564 , HOH A:580 , SER B:38 , THR B:39 , SER B:40 , ILE B:112 , LEU B:116 , HOH B:583binding site for residue FMN A 400
2AC2SOFTWARESER A:38 , THR A:39 , SER A:40 , ILE A:112 , LEU A:116 , HIS B:11 , ARG B:12 , SER B:13 , ARG B:15 , GLN B:67 , TYR B:69 , CYS B:133 , TYR B:134 , ILE B:135 , GLY B:136 , GLY B:137 , LYS B:173 , ARG B:175 , EDO B:402 , HOH B:515 , HOH B:546 , HOH B:565 , HOH B:589binding site for residue FMN B 401
3AC3SOFTWAREHOH A:519 , HOH A:572 , GLY B:136 , GLY B:137 , ARG B:234 , FMN B:401binding site for residue EDO B 402
4AC4SOFTWAREARG B:217 , ASP B:219binding site for residue EDO B 403
5AC5SOFTWAREASN B:140 , ARG B:234 , HOH B:535binding site for residue EDO B 404

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5HDJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5HDJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5HDJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5HDJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5HDJ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:247
                                                                                                                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhh...........hhhhhhhhhhhhhh..hhhhh..eeeeee.hhhhhhhhhhhh..hhhhhh..eeeeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhh.....eeeeeeeeee............hhhhheee.....hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hdj A   2 NSVIETILNHRSIRKYEDKPLSEEQIQTIVESAQAASTSSYIQAYSIIGVKDKETKRKLAQLAGNQPYVETNGHFFVFCADFHRHDVIAEMEKKDLSTALESTEQFMVAIIDVALAAQNATLAAESMGLGACYIGGLRNELEEVSKLLKLPHHVIPLFGLTVGHPAGITDKKPRLPFKHVYHEETYEPNDEQTKKELTAYNEEISAYYNERTNGKRQDTWTGQMAEMLSNPKRMYMKEFVEKQGFNK 248
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211       221       231       241       


Chain B from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh...........hhhhhhhhhhhhhh..hhhhh..eeeeee.hhhhhhhhhhhh..hhhhhh..eeeeeeeehhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..eeeeehhhhhhhhhhhhhh.....eeeeeeeeee............hhhhheee.....hhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhh.....hhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5hdj B   1 MNSVIETILNHRSIRKYEDKPLSEEQIQTIVESAQAASTSSYIQAYSIIGVKDKETKRKLAQLAGNQPYVETNGHFFVFCADFHRHDVIAEMEKKDLSTALESTEQFMVAIIDVALAAQNATLAAESMGLGACYIGGLRNELEEVSKLLKLPHHVIPLFGLTVGHPAGITDKKPRLPFKHVYHEETYEPNDEQTKKELTAYNEEISAYYNERTNGKRQDTWTGQMAEMLSNPKRMYMKEFVEKQGFNK 248
                                    10        20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5HDJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5HDJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5HDJ)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
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