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(-) Description

Title :  CRYSTAL STRUCTURE OF THE DROSOPHILA CG3822 KAIR1D LIGAND BINDING DOMAIN COMPLEX WITH D-AP5
 
Authors :  P. Dharkar, M. L. Mayer
Date :  28 Oct 15  (Deposition) - 09 Nov 16  (Release) - 21 Dec 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.75
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Li, P. Dharkar, T. H. Han, M. Serpe, C. H. Lee, M. L. Mayer
Novel Functional Properties Of Drosophila Cns Glutamate Receptors.
Neuron V. 92 1036 2016
PubMed-ID: 27889096  |  Reference-DOI: 10.1016/J.NEURON.2016.10.058

(-) Compounds

Molecule 1 - RE06730P,GH17276
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: ORIGAMI B(DE3)
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 411-526
    Gene: CG3822, DGRIGH17276, DGRI_GH17276, GH17276
    Organism Common: FRUIT FLY
    Organism Scientific: DROSOPHILA MELANOGASTER, DROSOPHILA GRIMSHAWI
    Organism Taxid: 7227, 7222

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 4)

Asymmetric/Biological Unit (2, 4)
No.NameCountTypeFull Name
12JJ2Ligand/Ion5-PHOSPHONO-D-NORVALINE
25OY2Ligand/Ion5-PHOSPHONO-L-NORVALINE

(-) Sites  (4, 4)

Asymmetric Unit (4, 4)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETYR A:65 , ASP A:93 , LEU A:94 , THR A:95 , ARG A:100 , SER A:146 , GLU A:197 , 5OY A:302 , HOH A:407 , HOH A:415 , HOH A:425binding site for residue 2JJ A 301
2AC2SOFTWARETYR A:65 , ASP A:93 , LEU A:94 , THR A:95 , ARG A:100 , GLY A:145 , SER A:146 , GLU A:197 , 2JJ A:301 , HOH A:407 , HOH A:415 , HOH A:425binding site for residue 5OY A 302
3AC3SOFTWARETYR B:65 , ASP B:93 , LEU B:94 , THR B:95 , ARG B:100 , LEU B:142 , SER B:146 , ASN B:178 , GLU B:197 , 5OY B:302 , HOH B:481binding site for residue 2JJ B 301
4AC4SOFTWARETYR B:65 , ASP B:93 , LEU B:94 , THR B:95 , ARG B:100 , LEU B:142 , SER B:146 , ASN B:178 , GLU B:197 , TYR B:223 , 2JJ B:301 , HOH B:481binding site for residue 5OY B 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5EHS)

(-) Cis Peptide Bonds  (4, 4)

Asymmetric/Biological Unit
No.Residues
1Asn A:18 -Pro A:19
2Arg A:170 -Pro A:171
3Asn B:18 -Pro B:19
4Arg B:170 -Pro B:171

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5EHS)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5EHS)

(-) Exons   (0, 0)

(no "Exon" information available for 5EHS)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:260
                                                                                                                                                                                                                                                                                                    
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeeee.......ee.......hhhh.eehhhhhhhhhhhhhhh.eeeeee................hhhhhhhhh....ee......hhhhhh..ee....eee.eeeeee......hhhhhhh....eeee...hhhhhhhhhh.hhhhhhhhhhhhhh.......hhhhhhhhhhh....eeeeeehhhhhhhhh....eeee......eee..ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ehs A   5 LKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSILYRKGTPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQEEGKLHILKTKWWKEKRGG 264
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264


Chain B from PDB  Type:PROTEIN  Length:258
                                                                                                                                                                                                                                                                                                  
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeeee.......ee.......hhhh.eehhhhhhhhhhhhhhh.eeeeee........ee....eehhhhhhhhh....ee......hhhhhh..ee....eee.eeeeee......hhhhhhh....eeee...hhhhhhhhhh.hhhhhhhhhhhhh........hhhhhhhhhhhh...eeeeeehhhhhhhhh....eeee......eee..ee.....hhhhhhhhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ehs B   5 LKNKTLVVTTILSNPYCMRKESAIPLSGNDQFEGYAVDLIHEISKSLGFNYKIQLVPDGSYGSLNKLTGEWNGMIRELLEQRADLAIADLTITFEREQAVDFTTPFMNLGVSILYRKGTPIESAEDLAKQTRIKYGALKGGSTAAFFRDSKISTYQRMWSFMESARPSVFTASNGEGVERVAKGKGSYAFLMESTSIEYVTERNCELTQVGGMLDTKSYGIATPPNSPYRTAINSVILKLQEEGKLHILKTKWWKEKR 262
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5EHS)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5EHS)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5EHS)

(-) Gene Ontology  (16, 30)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q8MS48_DROME | Q8MS48: 5ehm

(-) Related Entries Specified in the PDB File

5dtb GLUTAMATE COMPLEX
5ehm