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(-) Description

Title :  CRYSTAL STRUCTURE OF A PUTATIVE D-ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE FROM VIBRIO CHOLERAE
 
Authors :  P. J. Stogios, T. Skarina, A. Savchenko, W. F. Anderson, Center For St Genomics Of Infectious Diseases (Csgid)
Date :  17 Sep 15  (Deposition) - 30 Sep 15  (Release) - 30 Sep 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.66
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Structural Genomics, Niaid, National Institute Of Allergy And Infectious Diseases, Csgid, Center For Structural Genomics Of Infectious Diseases, Nad Binding, Dehydrogenase, Erythronate-4- Phosphate Dehydrogenase, Oxidoreductase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. J. Stogios
Crystal Structure Of A Putative D-Erythronate-4-Phosphate Dehydrogenase From Vibrio Cholerae
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - ERYTHRONATE-4-PHOSPHATE DEHYDROGENASE
    Chains: A
    EC Number: 1.1.1.290
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PCPD
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Gene: PDXB, VC_2108
    Organism Scientific: VIBRIO CHOLERAE SEROTYPE O1 (STRAIN ATCC 39315 / EL TOR INABA N16961)
    Organism Taxid: 243277
    Strain: ATCC 39315 / EL TOR INABA N16961

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 13)

Asymmetric Unit (3, 13)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2NAD1Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO410Ligand/IonSULFATE ION
Biological Unit 1 (2, 22)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2NAD2Ligand/IonNICOTINAMIDE-ADENINE-DINUCLEOTIDE
3SO420Ligand/IonSULFATE ION

(-) Sites  (13, 13)

Asymmetric Unit (13, 13)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREASN A:98 , GLY A:130 , ALA A:131 , GLY A:132 , GLN A:133 , VAL A:134 , ASP A:153 , PRO A:154 , LYS A:156 , HIS A:181 , THR A:182 , PRO A:183 , TRP A:190 , THR A:192 , ALA A:213 , ALA A:214 , ARG A:215 , ASP A:239 , HIS A:261 , ALA A:263 , GLY A:264binding site for residue NAD A 401
02AC2SOFTWAREARG A:65 , HIS A:349 , HOH A:518binding site for residue SO4 A 402
03AC3SOFTWAREARG A:34 , ARG A:50 , LYS A:67binding site for residue SO4 A 403
04AC4SOFTWAREARG A:50 , SER A:51 , THR A:73 , LYS A:270 , HOH A:568binding site for residue SO4 A 404
05AC5SOFTWAREVAL A:79 , ASP A:80 , GLN A:81 , ALA A:82 , HOH A:548binding site for residue SO4 A 405
06AC6SOFTWAREASN A:152 , PRO A:154 , GLU A:167 , LEU A:168binding site for residue SO4 A 406
07AC7SOFTWAREILE A:184 , THR A:185 , ARG A:186 , GLY A:187binding site for residue SO4 A 407
08AC8SOFTWAREARG A:272 , PRO A:293binding site for residue SO4 A 408
09AC9SOFTWAREASN A:14 , ASN A:64 , ARG A:65binding site for residue SO4 A 409
10AD1SOFTWAREARG A:215 , GLY A:216 , GLU A:244binding site for residue SO4 A 410
11AD2SOFTWAREALA A:365 , HIS A:368 , LEU A:369 , ALA A:370binding site for residue SO4 A 411
12AD3SOFTWARETYR A:17 , ALA A:20binding site for residue CL A 412
13AD4SOFTWAREASP A:77binding site for residue CL A 413

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5DT9)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric Unit
No.Residues
1Glu A:244 -Pro A:245

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DT9)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DT9)

(-) Exons   (0, 0)

(no "Exon" information available for 5DT9)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
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  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:379
                                                                                                                                                                                                                                                                                                                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeeeee....hhhhhhh..eeeeeehhhhhhhhhhh...eeee..................eeee........hhhhhhhh..eee.....hhhhhhhhhhhhhhhhhhhhh.hhhhh.eeee..hhhhhhhhhhhhhh...eeeehhhhhhhh......hhhhhhhhh.eeee................hhhhhh......eeee..hhhhhhhhhhhhhhh.....eeee............hhhhh.ee.......hhhhhhhhhhhhhhhhhhhhh.....hhhhhh......eee.....hhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh.....hhhh.eeee.....hhhhhhhh.eeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5dt9 A   4 IPTMKILIDENMPYAQALFSQLGEVILKPGRTLTADDLIDVDALMIRSVTKVNDALLAKANRLKFVGTATAGMDHVDQALLRERGIFFTAAPGCNKVGVAEYVFSVLMVLAQQQGFSVFDKTVGIIGAGQVGSYLAKCLSGIGMKVLLNDPPKQAQGDEREFTELETLLKQADVITLHTPITRGGEWPTHHLIDAAILEQLRSDQILINAARGPVVDNAALKARLQQGDGFTAVLDVFEFEPQVDMELLPLLAFATPHIAGYGLEGKARGTTMIFNSYCEFLGSAHCANPASLLPKAPVPKVYLERAWDEETLRTLTQIIYDVRKDDAQFRREIHQPGAFDLMRKHYWDRREYSAVTLAGGADCHLAPLAKLGFQVEVC 382
                                    13        23        33        43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253       263       273       283       293       303       313       323       333       343       353       363       373
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 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DT9)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DT9)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DT9)

(-) Gene Ontology  (11, 11)

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