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(-) Description

Title :  HIV-1 REV NTD DIMERS WITH VARIABLE CROSSING ANGLES
 
Authors :  M. A. Dimattia, N. R. Watts, P. T. Wingfield, J. M. Grimes, D. I. Stuart, A
Date :  31 Aug 15  (Deposition) - 29 Jun 16  (Release) - 14 Jun 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  4.30
Chains :  Asym./Biol. Unit :  H,L,M
Keywords :  Hiv, Helical Hairpin, Nuclear Export, Rna-Binding, Immune System (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. A. Dimattia, N. R. Watts, N. Cheng, R. Huang, J. B. Heymann, J. M. Grimes, P. T. Wingfield, D. I. Stuart, A. C. Steven
The Structure Of Hiv-1 Rev Filaments Suggests A Bilateral Model For Rev-Rre Assembly.
Structure V. 24 1068 2016
PubMed-ID: 27265851  |  Reference-DOI: 10.1016/J.STR.2016.04.015

(-) Compounds

Molecule 1 - ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, HEAVY CHAIN
    Chains: H
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 2 - ANTI-REV ANTIBODY FAB SINGLE-CHAIN VARIABLE FRAGMENT, LIGHT CHAIN
    Chains: L
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Organism Scientific: HOMO SAPIENS
    Organism Taxid: 9606
 
Molecule 3 - PROTEIN REV
    Chains: M
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: REV
    Organism Scientific: HUMAN IMMUNODEFICIENCY VIRUS 1
    Organism Taxid: 11676

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : HLM

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5DHZ)

(-) Sites  (0, 0)

(no "Site" information available for 5DHZ)

(-) SS Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1H:22 -H:94
2L:23 -L:88

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr L:7 -Pro L:8

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5DHZ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5DHZ)

(-) Exons   (0, 0)

(no "Exon" information available for 5DHZ)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain H from PDB  Type:PROTEIN  Length:117
                                                                                                                                                     
               SCOP domains --------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ..eeeee...ee.....eeeeeeee.......eeeeeee.....eeeeeeee....eeee.......eeeee...eeeeee...hhhhheeeeeeee........ee...eeeee.. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------- Transcript
                 5dhz H   1 QEQLVESGGRLVTPGTALTLTCKVSGFSLSGFWLNWVRQAPGKGLEWVGAIYRGSGSEWYASWAKGRFTISDTSTTVTLKLTSPTTEDTATYFCAADTTDNGYFTIWGPGTLVTVSS 117
                                    10        20        30        40        50        60        70        80        90       100       110       


Chain L from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...eeee..eeee.....eeeeeee.......eeeeee......eeeee...ee.......eeeeee..eeeeee...hhhhheeeeeeee.......eee...eeeee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5dhz L   1 ELVMTQTPSSVSEPVGGTVTIKCQASQSISSWLSWYQQKPGQPPKLLIYDASNLASGVPSRFMGSGSGTEYTLTISGVQREDAATYYCLGGYPAASYRTAFGGGTELEII 110
                                    10        20        30        40        50        60        70        80        90       100       110


Chain M from PDB  Type:PROTEIN  Length:52
                                                                                    
               SCOP domains ---------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------- Transcript
                 5dhz M   5 SGDSDEDLLKAVRLIKFLYQSNPPPRNRRRRWRERQRQIHSISERILSTYLG  65
                                    14        24    ||  43        53        63  
                                                   29|                          
                                                    39
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5DHZ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5DHZ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5DHZ)

(-) Gene Ontology  (9, 17)

Asymmetric/Biological Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Thr L:7 - Pro L:8   [ RasMol ]  
 

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        Q76PP8_9HIV1 | Q76PP8: 5dhv 5dhy
        REV_HV1B1 | P04616: 2x7l 5dhv 5dhx 5dhy

(-) Related Entries Specified in the PDB File

5dhv 5DHV IS A DIFFERENT CRYSTAL FORM, VARIABLE CROSSING ANGLES OF REV N- TERMINAL DOMAIN
5dhx 5DHX IS A DIFFERENT CRYSTAL FORM, VARIABLE CROSSING ANGLES OF REV N- TERMINAL DOMAIN
5dhy 5DHY IS A DIFFERENT CRYSTAL FORM, VARIABLE CROSSING ANGLES OF REV N- TERMINAL DOMAIN