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(-) Description

Title :  CRYSTAL STRUCTURE OF UNCHARACTERIZED PROTEIN Q8DWV2 FROM STREPTOCOCCUS AGALACTIAE
 
Authors :  J. D. Taylor, S. Hare, S. J. Matthews
Date :  22 Jul 15  (Deposition) - 03 Feb 16  (Release) - 02 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Duf1706, Dfsb, Unknown Function (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Taylor, G. Taylor, S. A. Hare, S. J. Matthews
Structures Of The Dfsb Protein Family Suggest A Cationic, Helical Sibling Lethal Factor Peptide.
J. Mol. Biol. V. 428 554 2016
PubMed-ID: 26804569  |  Reference-DOI: 10.1016/J.JMB.2016.01.013

(-) Compounds

Molecule 1 - UNCHARACTERIZED PROTEIN
    Atcc: BAA-611
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PQE30
    Expression System Taxid: 562
    Gene: SAG2111
    Organism Scientific: STREPTOCOCCUS AGALACTIAE SEROTYPE V (STRAIN ATCC BAA-611 / 2603 V/R)
    Organism Taxid: 208435

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MPD1Ligand/Ion(4S)-2-METHYL-2,4-PENTANEDIOL
2MRD1Ligand/Ion(4R)-2-METHYLPENTANE-2,4-DIOL

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARETHR A:14 , ILE A:162 , ALA A:166 , PRO A:167 , THR A:170 , LYS B:158binding site for residue MPD A 201
2AC2SOFTWARELYS A:158 , THR B:14 , THR B:170binding site for residue MRD B 201

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CQV)

(-) Cis Peptide Bonds  (1, 1)

Asymmetric/Biological Unit
No.Residues
1Thr A:84 -Pro A:85

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CQV)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CQV)

(-) Exons   (0, 0)

(no "Exon" information available for 5CQV)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh....hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cqv A  13 RTYSDKNELKEEVLKSYKKYIAEFNDIPEKLKDLRIDEVDRTPAENLAYQVGWTTLILKWESDEQSGLEVKTPTETFKWNQLGELYQHFTETYASLTIKELTAQLNDNVDAIGNMIDSMSDEVLFKPHMRNWADSATKVWEVYKFIHINTVAPFGTFRTKIRKWKKVALK 184
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       154       164       174       184
                                                                                                                                                                   150|                               
                                                                                                                                                                    153                               


Chain B from PDB  Type:PROTEIN  Length:170
                                                                                                                                                                                                          
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhh....hhhhh.........hhhhhhhhhhhhhhhhhhhhhhhhh..............hhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cqv B  13 RTYSDKNELKEEVLKSYKKYIAEFNDIPEKLKDLRIDEVDRTPAENLAYQVGWTTLILKWESDEQSGLEVKTPTETFKWNQLGELYQHFTETYASLTIKELTAQLNDNVDAIGNMIDSMSDEVLFKPHMRNWADSATKVWEVYKFIHINTVAPFGTFRTKIRKWKKVALK 184
                                    22        32        42        52        62        72        82        92       102       112       122       132       142       154       164       174       184
                                                                                                                                                                   150|                               
                                                                                                                                                                    153
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CQV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CQV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CQV)

(-) Gene Ontology  (0, 0)

Asymmetric/Biological Unit(hide GO term definitions)
    (no "Gene Ontology" information available for 5CQV)

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  5cqv
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 Related Entries

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