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(-) Description

Title :  STRUCTURE OF HYDROXYETHYLTHIAZOLE KINASE THIM FROM STAPHYLOCOCCUS AUREUS IN COMPLEX WITH NATIVE SUBSTRATE 2-(4-METHYL-1,3-THIAZOL-5-YL)ETHANOL.
 
Authors :  J. Drebes, M. Kuenz, R. J. Eberle, D. Oberthuer, H. Cang, C. Wrenger, C. B
Date :  20 Jul 15  (Deposition) - 23 Mar 16  (Release) - 23 Mar 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.90
Chains :  Asym. Unit :  A,B,C,E,F,H
Biol. Unit 1:  A,B,C  (1x)
Biol. Unit 2:  E,F,H  (1x)
Keywords :  Bacterial Thiamine Biosynthesis, Hydroxyethylthiazole Kinase, Transferase, 2-(4-Methyl-1, 3-Thiazol-5-Yl)Ethanol (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Drebes, M. Kunz, B. Windshugel, A. G. Kikhney, I. B. Muller, R. J. Eberle, D. Oberthur, H. Cang, D. I. Svergun, M. Perbandt, C. Betzel, C. Wrenger
Structure Of Thim From Vitamin B1 Biosynthetic Pathway Of Staphylococcus Aureus - Insights Into A Novel Pro-Drug Approach Addressing Mrsa Infections.
Sci Rep V. 6 22871 2016
PubMed-ID: 26960569  |  Reference-DOI: 10.1038/SREP22871

(-) Compounds

Molecule 1 - HYDROXYETHYLTHIAZOLE KINASE
    Chains: A, B, C, E, F, H
    EC Number: 2.7.1.50
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PASK-IBA3
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: THIM, SAR2181
    Organism Scientific: STAPHYLOCOCCUS AUREUS
    Organism Taxid: 1280
    Synonym: 4-METHYL-5-BETA-HYDROXYETHYLTHIAZOLE KINASE,THZ KINASE

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCEFH
Biological Unit 1 (1x): ABC   
Biological Unit 2 (1x):    EFH

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 10)

Asymmetric Unit (2, 10)
No.NameCountTypeFull Name
1MG4Ligand/IonMAGNESIUM ION
2TZE6Ligand/Ion2-(4-METHYL-THIAZOL-5-YL)-ETHANOL
Biological Unit 1 (1, 3)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TZE3Ligand/Ion2-(4-METHYL-THIAZOL-5-YL)-ETHANOL
Biological Unit 2 (1, 3)
No.NameCountTypeFull Name
1MG-1Ligand/IonMAGNESIUM ION
2TZE3Ligand/Ion2-(4-METHYL-THIAZOL-5-YL)-ETHANOL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREPRO A:37 , ALA A:38 , MET A:39 , GLY C:61 , THR C:186 , CYS C:190binding site for residue TZE A 301
02AC2SOFTWAREGLY A:61 , VAL A:90 , THR A:186 , CYS A:190 , PRO B:37 , MET B:39binding site for residue TZE A 302
03AC3SOFTWAREASP A:88 , GLU A:120 , HOH A:408binding site for residue MG A 303
04AC4SOFTWAREASP B:88 , GLY B:116 , GLU B:120binding site for residue MG B 301
05AC5SOFTWAREASN B:19 , GLY B:61 , THR B:186 , CYS B:190 , PRO C:37 , ALA C:38 , MET C:39binding site for residue TZE C 301
06AC6SOFTWAREASP C:88 , GLU C:120 , HOH C:510binding site for residue MG C 302
07AC7SOFTWAREGLY E:61 , THR E:186 , CYS E:190 , HOH E:402 , PRO F:37 , MET F:39binding site for residue TZE E 301
08AC8SOFTWAREASP E:88 , GLU E:120binding site for residue MG E 302
09AC9SOFTWAREASN F:19 , VAL F:22 , GLY F:61 , THR F:186 , CYS F:190 , PRO H:37 , ALA H:38 , MET H:39binding site for residue TZE F 301
10AD1SOFTWAREPRO E:37 , ALA E:38 , MET E:39 , GLY H:61 , THR H:186 , CYS H:190binding site for residue TZE H 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5COJ)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5COJ)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5COJ)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5COJ)

(-) Exons   (0, 0)

(no "Exon" information available for 5COJ)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author hhhhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5coj A   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEVEEN 265
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253       263  
                                                                                                                                                       126|                                                                                                                             
                                                                                                                                                        140                                                                                                                             


Chain B from PDB  Type:PROTEIN  Length:248
                                                                                                                                                                                                                                                                                        
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.ee. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5coj B   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQE 261
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253        
                                                                                                                                                       126|                                                                                                                         
                                                                                                                                                        140                                                                                                                         


Chain C from PDB  Type:PROTEIN  Length:249
                                                                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhhh.eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhh.eee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5coj C   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEV 262
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||143       153       163       173       183       193       203       213       223       233       243       253         
                                                                                                                                                       126|                                                                                                                          
                                                                                                                                                        140                                                                                                                          


Chain E from PDB  Type:PROTEIN  Length:252
                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhh..hhhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh.eeeeee.. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5coj E   2 NYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDLDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIRIQEVEENL 266
                                    11        21        31        41        51        61        71        81        91       101       111       121    || 144       154       164       174       184       194       204       214       224       234       244       254       264  
                                                                                                                                                      126|                                                                                                                              
                                                                                                                                                       140                                                                                                                              


Chain F from PDB  Type:PROTEIN  Length:241
                                                                                                                                                                                                                                                                                 
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhh.eeeee....hhhhhhhhhhhh..eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhh.hhhhhhhhhhhhh.eeeee...eeee....eeee...hhhhhhh..hhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5coj F   2 NYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRI 257
                                    11        21        31        41        51        61        71        81        91       101       111       121   ||  146       156       166       176       186       196       206       216       226       236       246       256 
                                                                                                                                                     125|                                                                                                                    
                                                                                                                                                      141                                                                                                                    


Chain H from PDB  Type:PROTEIN  Length:244
                                                                                                                                                                                                                                                                                    
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh.eeeee....hhhhhhhhhhhhh.eee...hhhhhhhhhhhh.eeeee....hhhhhhhhhhhhhhhhhhh..eeee..hhhhhhhhhhhhhhhhhhh...eeeeehhhhhhhhh.hhhhhhhhhhhhh.eeeee...eeeee..eeeee...hhhhhhh.hhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5coj H   1 MNYLNNIRIENPLTICYTNDVVKNFTANGLLSIGASPAMSEAPEEAEEFYKVAQALLINIGTLTAQNEQDIIAIAQTANEAGLPIVFDPVAVGASTYRKQFCKLLLKSAKVSVIKGNASEILALIDDAVTIAKKAYAIYKTAIVITGKEDVIVQGDKAIVLANGSPLLARVTGAGCLLGGIIAGFLFRETEPDIEALIEAVSVFNIAAEVAAENENCGGPGTFSPLLLDTLYHLNETTYQQRIR 258
                                    10        20        30        40        50        60        70        80        90       100       110       120     ||144       154       164       174       184       194       204       214       224       234       244       254    
                                                                                                                                                       126|                                                                                                                     
                                                                                                                                                        141
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5COJ)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5COJ)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5COJ)

(-) Gene Ontology  (10, 10)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        THIM_STAAR | Q6GEY3: 5cga 5cge 5cm5

(-) Related Entries Specified in the PDB File

5cge THE SAME PROTEIN WITH SUBSTRATE ANALOG (2-(2-METHYL-1H-IMIDAZOLE-1- YL)ETHANOL).
5cm5 THE SAME PROTEIN, WITHOUT SUBSTRATE, NATIVE.
5gca THE SAME PROTEIN WITH SUBSTRATE ANALOG (2-(1,3,5-TRIMETHYL-1H- PYRAZOLE-4-YL)ETHANOL).