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(-) Description

Title :  STRUCTURAL INSIGHTS INTO THE SCC2-SCC4 COHESIN LOADER
 
Authors :  M. R. Singleton, W. C. H. Chao
Date :  23 Jun 15  (Deposition) - 05 Aug 15  (Release) - 12 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.60
Chains :  Asym. Unit :  A,B,C,D
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Keywords :  Cohesin Loader, Tpr Repeat, Cell Cycle (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  W. C. Chao, Y. Murayama, S. Munoz, A. Costa, F. Uhlmann, M. R. Singleton
Structural Studies Reveal The Functional Modularity Of The Scc2-Scc4 Cohesin Loader.
Cell Rep V. 12 719 2015
PubMed-ID: 26212329  |  Reference-DOI: 10.1016/J.CELREP.2015.06.071

(-) Compounds

Molecule 1 - AGR133CP
    Chains: A, C
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Fragment: RESIDUES 34-653
    Gene: AGOS_AGR133C
    Organism Common: YEAST
    Organism Scientific: ASHBYA GOSSYPII
    Organism Taxid: 284811
    Strain: ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056
 
Molecule 2 - SISTER CHROMATID COHESION PROTEIN 2
    Chains: B, D
    Engineered: YES
    Expression System: SPODOPTERA FRUGIPERDA
    Expression System Common: FALL ARMYWORM
    Expression System Taxid: 7108
    Gene: SCC2, AGL133W
    Organism Common: YEAST
    Organism Scientific: ASHBYA GOSSYPII (STRAIN ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056)
    Organism Taxid: 284811
    Strain: ATCC 10895 / CBS 109.51 / FGSC 9923 / NRRL Y-1056

 Structural Features

(-) Chains, Units

  1234
Asymmetric Unit : ABCD
Biological Unit 1 (1x): AB  
Biological Unit 2 (1x):   CD

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (0, 0)

(no "Ligand,Modified Residues,Ions" information available for 5C6G)

(-) Sites  (0, 0)

(no "Site" information available for 5C6G)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C6G)

(-) Cis Peptide Bonds  (8, 8)

Asymmetric Unit
No.Residues
1Ser A:536 -Ser A:537
2Ser A:537 -Asn A:538
3Pro B:103 -Gly B:104
4Gly B:104 -Met B:105
5Glu C:174 -Glu C:175
6Ala C:218 -Gly C:219
7Pro D:103 -Gly D:104
8Gly D:104 -Met D:105

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C6G)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C6G)

(-) Exons   (0, 0)

(no "Exon" information available for 5C6G)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:605
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhh.......eeeeeee..eeeeee....hhhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...............hhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c6g A  34 MVMAVNLHKHQKNLVYRLSQQYLAAARDLAADVRSEKQLQQYYTLVRQCVHGLRYVKDGFQLTVEEDIQVTLQLARVLLEETHEVELAEQYLGSLRTRLRTTPLTDARHAVEFQLLYDVPLAKEDRAELRQVVRHTTGLLEELADSDAWAWLFRYCRIIGLEAGGARSNSAVLQEYLKLLQLVSAGPVGLHAFVLCSCVAFILDRVVELDRSLLTQLRALRKATAIPLQLQMWSLLLDLLVAIQLDENIMDLLTDFKDFFSTHKDADGDDTVVLSIKEGVNVRLFVPLFNYHDCKNILLLFQSVSYLTTCYSKSSNFSTKFLPKVLKTSQELKETLQKRTSLVHVQSIRNIYDKVVDLCRFYQTWESLILSERVEGGIPRLQYSEYNILLEAISSQQAQQADLSHVGRLYSTLTKSKDPELRLIGIAHLYTLIVAELSSCSEGPEGISELTQKTTDAWEQLQHAYLSSSLVQNNVWKCSVAILWAISRFEPFSGHPIHSSSNDQQTLYMQQLNEFFTDNALFKLKKSLLLHFLLNYLGGTMLVSDVQKRCDISSSCFQMGKQQYMPGMRYVAGIWHLMNSTVAMKTKEVAITRAKLEGLVDKMLN 652
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223       233       243       253  ||   264       274       284       294     ||306       316       326       336       346       356       366       376       386       396       406       416       426       436       446       456       466       476       486       496       506       516       526       536       546       556||     577       587       597       607       617       627       637       647     
                                                                                                                                                                                                                                                        256|                                       300|                                                                                                                                                                                                                                                           557|                                                                                   
                                                                                                                                                                                                                                                         258                                        303                                                                                                                                                                                                                                                            569                                                                                   


Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ...........hhhhhhh.........hhhhhhh.....eeeeee.........hhhhhhh................ee..............hhhhh...hhhhhhhh......hhh.ee..... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c6g B   3 TFPGEDTRIPKRISEALSHQPLNHLVPKRELSRLLSKPVQISVQLESEDAFEEVPEELWQYPHPIDLDPLRLEQPLRFRRPRGARLDYREDSSEIADLPGMGQLARACLSGTQLVDSAAIVESIES 130
                                    12        22        32        42        52        62        72  ||    84        94       104       114       124      
                                                                                                   75|                                                    
                                                                                                    78                                                    


Chain C from PDB  Type:PROTEIN  Length:588
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhh......hhhhhhhhhhhhhhhh...hhhhhhhhhhhhhhhhhhhhh..eeeeeee..eeeeee....hhhhhhhhhhhhhhhhh.........hhhhhhhhhhhhhhhhhhhh.....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh...........hhhhhhhhhhhhhhh....hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..........hhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c6g C  34 MVMAVNLHKHQKNLVYRLSQQYLAAARDLAADVRSEKQLQQYYTLVRQCVHGLRYVKDGFQLTVEEDIQVTLQLARVLLEETHEVELAEQYLGSLRTRLRTTPLTDARHAVEFQLLYDVPLAKEDRAELRQVVRHTTGLLEELADSDAWAWLFRYCRIIGLEAGARSNSAVLQEYLKLLQLVSAGPVGLHAFVLCSCVAFILDRVVLDRSLLTQLRALRKAGTQLQMWSLLLDLLVAIQLDENIMDLLTDFKDFFSTHKDALKDDDTVVLSIKEGVNVRLFVPLFNYHDCKNILLLFQSVSYLTTCYSKSSNFSTKFLPKVLKTSQELKETLQKRTSLVHVQSIRNIYDKVVDLCRFYQTWESLILSERVEGGIPRLQYSEYNILLEAISSQQAQQADLSHVGRLYSTLTKSKDPELRLIGIAHLYTLIVAELSSCGPEGISELTQKTTDAWEQLQHAYLSSSLVQNNVWKCSVAILWAISRFEPFSGHDQQTLYMQQLNEFFTDNALVSLLLHFLLNYLGGTMLVSDVQKRCDISSSCFQMGKQQYMPGMRYVAGIWHLMNSTVAMKTKEVAITRAKLEGLVDKMLN 652
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193  ||   204       214       224       234     ||245       255  ||   269       279       289       299   ||  310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470     ||482       492       502       512       522       539       549       574       584       594       604       614       624       634       644        
                                                                                                                                                                                            196|                                       240|             258|                                     303|                                                                                                                                                                        476|                                                 531|                558|                                                                              
                                                                                                                                                                                             198                                        242              263                                      305                                                                                                                                                                         479                                                  539                 574                                                                              


Chain D from PDB  Type:PROTEIN  Length:121
                                                                                                                                                         
               SCOP domains ------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ...........hhhhhhh.........hhhhhh.....eeee.........hhhhhhh................ee..............hhhhh...hhhhhhhhh.....hhh.ee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c6g D   3 TFPGEDTRIPKRISEALSHQPLNHLVPKRELSRLLSKISVQLESEDAFEEVPEELWQYPHPIDLDPLRLEQPLRFRRPRGARLDYREDSSEIADLPGMGQLARACLSGTQLVDSAAIVESI 128
                                    12        22        32      ||45        55        65        75|       87        97       107       117       127 
                                                               39|                              75|                                                  
                                                                43                               78
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C6G)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C6G)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C6G)

(-) Gene Ontology  (25, 32)

Asymmetric Unit(hide GO term definitions)

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  Cis Peptide Bonds
    Ala C:218 - Gly C:219   [ RasMol ]  
    Glu C:174 - Glu C:175   [ RasMol ]  
    Gly B:104 - Met B:105   [ RasMol ]  
    Gly D:104 - Met D:105   [ RasMol ]  
    Pro B:103 - Gly B:104   [ RasMol ]  
    Pro D:103 - Gly D:104   [ RasMol ]  
    Ser A:536 - Ser A:537   [ RasMol ]  
    Ser A:537 - Asn A:538   [ RasMol ]  
 
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