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(-) Description

Title :  CRYSTAL STRUCTURE OF THE PERIPLASMIC REGION OF MACB FROM E. COLI
 
Authors :  N. C. Ha, J. S. Kim
Date :  19 Jun 15  (Deposition) - 22 Jun 16  (Release) - 22 Jun 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  3.00
Chains :  Asym. Unit :  A,B,C,D,E,F,G
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Biol. Unit 3:  C  (1x)
Biol. Unit 4:  D  (1x)
Biol. Unit 5:  E  (1x)
Biol. Unit 6:  F  (1x)
Biol. Unit 7:  G  (1x)
Keywords :  Efflux Pump, Abc Transporter, Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  N. C. Ha, J. S. Kim
Crystal Structure Of The Periplasmic Region Of Macb From E. Coli
To Be Published
PubMed: search

(-) Compounds

Molecule 1 - MACROLIDE EXPORT ATP-BINDING/PERMEASE PROTEIN MACB
    Chains: A, B, C, D, E, F, G
    EC Number: 3.6.3.-
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Fragment: UNP RESIDUES 297-522
    Gene: MACB, ECP_0894
    Organism Taxid: 362663
    Strain: 536 / UPEC

 Structural Features

(-) Chains, Units

  1234567
Asymmetric Unit : ABCDEFG
Biological Unit 1 (1x): A      
Biological Unit 2 (1x):  B     
Biological Unit 3 (1x):   C    
Biological Unit 4 (1x):    D   
Biological Unit 5 (1x):     E  
Biological Unit 6 (1x):      F 
Biological Unit 7 (1x):       G

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 26)

Asymmetric Unit (1, 26)
No.NameCountTypeFull Name
1MSE26Mod. Amino AcidSELENOMETHIONINE
Biological Unit 1 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 2 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 3 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE
Biological Unit 4 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 5 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 6 (1, 4)
No.NameCountTypeFull Name
1MSE4Mod. Amino AcidSELENOMETHIONINE
Biological Unit 7 (1, 3)
No.NameCountTypeFull Name
1MSE3Mod. Amino AcidSELENOMETHIONINE

(-) Sites  (0, 0)

(no "Site" information available for 5C59)

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5C59)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5C59)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5C59)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5C59)

(-) Exons   (0, 0)

(no "Exon" information available for 5C59)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:183
                                                                                                                                                                                                                       
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......hhhhh...hhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeee..hhhhhh.....ee...hhhhhhh...eeeehhhhhhhhh.........eeee..eeeeeeee..eeeeehhhhh....eeeeeeeee....hhhhhhhhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c59 A  14 NTIDVYPGNDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGmTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNmPARVIGVALRVWLPYSTmSGRQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNm 211
                                    23        33        43        53        63        73        83  |     93       103       113       123       133       155       165||     178       188       198       208  |
                                                                                                   86-MSE                                        133-MSE 141|      163-MSE                                      211-MSE
                                                                                                                                                          154         166|                                         
                                                                                                                                                                       170                                         


Chain B from PDB  Type:PROTEIN  Length:175
                                                                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee...............hhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeee..hhhhhh.....ee...hhhhhhh...eeeehhhhhhhhh....eeee..eeeeeeee..eeeee.hhhh.eeeeeeeee....hhhhhhhhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c59 B  14 NTIDVYPGNDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGmTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFVVGEVILVGNmPARVIGVALRVWLPYSTmSSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNm 211
                                    23        33        43        53        63        73        83  |     93       103       113   ||  128    |  138  ||   160  |||  176       186       196       206    |
                                                                                                   86-MSE                        117|       133-MSE 141|      163-MSE                                   211-MSE
                                                                                                                                  123                154       164|                                        
                                                                                                                                                                171                                        


Chain C from PDB  Type:PROTEIN  Length:173
                                                                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeee...............hhhhhhhhhh.....eeeeeeeeeeeeee..eeeeeeeeee..hhhhhh.....ee...hhhhhhh...eeeehhhhhhhhh.........eeee..eeeeeeee..eeeee....eeeeeeeee..hhhhhhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c59 C  15 TIDVYPGNDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGmTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFPHKADVVGEVILVGNmPARVIGVALRVWLPYSTQSWLNSITVRVSAEAEQQLTRLLSLRHGKKDFFTWNm 211
                                    24        34        44        54        64        74        84 |      94       104       114       124       134      |156     ||173      |188       198       208  |
                                                                                                  86-MSE                                        133-MSE 141|     162|       180|                      211-MSE
                                                                                                                                                         154      170        186                         


Chain D from PDB  Type:PROTEIN  Length:179
                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee.......hhhhh...hhhhhhhhhh...eeeeeeeeeeeeeeee..eeeeeeeeee..hhhhhh.....ee...hhhhhh....eeeehhhhhh...........eeee..eeeeeeee..eeeee.....eeeeeeeeee....hhhhhhhhhhhhhhhh.....eeeee. Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c59 D  14 NTIDVYPGNDFGDDDPQYQQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGmTFSEGNTFNQEQLNGRAQVVVLDSNTRRLFPHKADVVGEVILVGNmPARVIGVALRVWLPYSTmQSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNm 211
                                    23        33        43        53        63        73        83  |     93       103       113||     124       134      |156      |172       182       192       202        |
                                                                                                   86-MSE                     114|              133-MSE 141|      163-MSE                                   211-MSE
                                                                                                                               116                       154       170                                         


Chain E from PDB  Type:PROTEIN  Length:91
                                                                                                                           
               SCOP domains ------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eee.......eee..hhhhhh...ee...hhhhhhh...eeee.........eeee..eeeeeeee...eeee.........ee...eee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------- Transcript
                 5c59 E  14 NTIDVYPGASANGVSGDYFNVYGmSEGNTFNQEQLNGRAQVVVLDSNTRVVGEVILVGNmPARVIGVALRVWLPYSTmSGRSITVFFTWNm 211
                                   |72        82   ||   94       104       123       133       155       165||  || 210|
                                  21|             86-MSE                  113|       133-MSE 141|      163-MSE  ||    |
                                   71              89                      123                154         166|  ||    |
                                                                                                           175  ||    |
                                                                                                              178|    |
                                                                                                               206    |
                                                                                                                    211-MSE


Chain F from PDB  Type:PROTEIN  Length:144
                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeee.........hhhhhhhhhh.....eeeee.eeeeeeee..eeeeeeeeee..hhhhhh.....ee...hhhhhhh...eeeehhhhhhhhh.......eeee..eeeeeeee..eeeee......eeeee.eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5c59 F  14 NTIDVYPGNDFGDQALKYDDLIAIQKQPWVASATPAVSQNLRLRYNNVDVAASANGVSGDYFNVYGmTFSEGNTFNQEQLNGRAQVVVLDSNTRRQLFKADVVGEVILVGNmPARVIGVALRVWLPYSTmLNSITVRDFFTWNm 211
                                    23  ||    39        49        59        69        79      | 89        99       109       121       131 |     141|      163|     |207   |
                                       26|                                                   86-MSE                        117|          133-MSE 141|      163-MSE179|     |
                                        33                                                                                  120                   154       173    205     |
                                                                                                                                                                         211-MSE


Chain G from PDB  Type:PROTEIN  Length:151
                                                                                                                                                                                       
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeee..........hhhhhhhhh...eeeeeeeeeeee...eeeeee..hhhhhh.....ee...hhhhhhh...ee......eeee..eeeee.ee...eeee....eeeeeeeee....hhhhhhhhhhhhhhhhhh...eeeee. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5c59 G  14 NTIDVYPGNDFGDDDPKYDDLIAIQKQPWVASATPAVSQNLRLAASANGVSGDYFNVYGmTFSEGNTFNQEQLNGRAQVVVDVVGEVILVGNmPARVIGVALRVWLPYSTSWLNSITVRVKEGFDSAEAEQQLTRLLSLRHGKKDFFTWNm 211
                                    23     || 39        49        59  ||    76        86        96       106||     130  |    140||     162|      180       190       200       210|
                                          29|                        62|              86-MSE              107|        133-MSE 141|     162|                                     211-MSE
                                           36                         70                                   122                 154      171
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5C59)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5C59)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5C59)

(-) Gene Ontology  (14, 14)

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  5c59
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