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(-) Description

Title :  CRYSTAL STRUCTURE OF UNIVERSAL STRESS PROTEIN MSMEG_3811 IN COMPLEX WITH CAMP
 
Authors :  R. S. Adolph, S. Kleinboelting, M. Weyand, C. Steegborn
Date :  10 Feb 15  (Deposition) - 01 Apr 15  (Release) - 03 Jun 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.15
Chains :  Asym. Unit :  A,B,C,D,E,F
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  C,D  (1x)
Biol. Unit 3:  E,F  (1x)
Keywords :  Signaling Protein, Rv1636 Homolog, Usp Type 1 Homodimer, Walker A-Like Motif, Atp-Binding Motif (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  A. Banerjee, R. S. Adolph, J. Gopalakrishnapai, S. Kleinboelting, C. Emmerich, C. Steegborn, S. S. Visweswariah
A Universal Stress Protein (Usp) In Mycobacteria Binds Camp
J. Biol. Chem. V. 290 12731 2015
PubMed-ID: 25802331  |  Reference-DOI: 10.1074/JBC.M115.644856

(-) Compounds

Molecule 1 - UNIVERSAL STRESS PROTEIN
    Chains: A, C, B, E, D, F
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PPROEX-HTA
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Organism Scientific: MYCOBACTERIUM SMEGMATIS STR. MC2 155
    Organism Taxid: 246196
    Synonym: HYPOTHETICAL PROTEIN MSMEG_3811

 Structural Features

(-) Chains, Units

  123456
Asymmetric Unit : ABCDEF
Biological Unit 1 (1x): AB    
Biological Unit 2 (1x):   CD  
Biological Unit 3 (1x):     EF

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 18)

Asymmetric Unit (4, 18)
No.NameCountTypeFull Name
1CL2Ligand/IonCHLORIDE ION
2CMP6Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3POG3Ligand/Ion(20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL
4SO47Ligand/IonSULFATE ION
Biological Unit 1 (2, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3POG-1Ligand/Ion(20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL
4SO43Ligand/IonSULFATE ION
Biological Unit 2 (3, 6)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3POG2Ligand/Ion(20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL
4SO42Ligand/IonSULFATE ION
Biological Unit 3 (3, 5)
No.NameCountTypeFull Name
1CL-1Ligand/IonCHLORIDE ION
2CMP2Ligand/IonADENOSINE-3',5'-CYCLIC-MONOPHOSPHATE
3POG1Ligand/Ion(20S)-2,5,8,11,14,17-HEXAMETHYL-3,6,9,12,15,18-HEXAOXAHENICOSANE-1,20-DIOL
4SO42Ligand/IonSULFATE ION

(-) Sites  (18, 18)

Asymmetric Unit (18, 18)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLY A:10 , THR A:11 , ASP A:12 , SER A:14 , SER A:16 , SER A:17 , ALA A:38 , ALA A:40 , VAL A:113 , GLY A:114 , ASN A:115 , VAL A:116 , VAL A:129 , THR A:146 , HOH A:2002BINDING SITE FOR RESIDUE CMP A1148
02AC2SOFTWAREGLY C:10 , THR C:11 , ASP C:12 , SER C:14 , SER C:16 , SER C:17 , ALA C:38 , ALA C:40 , PRO C:95 , VAL C:113 , GLY C:114 , ASN C:115 , VAL C:116 , VAL C:129 , THR C:146 , HOH C:2009BINDING SITE FOR RESIDUE CMP C1148
03AC3SOFTWAREGLY D:10 , THR D:11 , ASP D:12 , SER D:14 , SER D:16 , SER D:17 , ALA D:38 , ALA D:40 , VAL D:113 , GLY D:114 , ASN D:115 , VAL D:116 , VAL D:129 , THR D:146 , HOH D:2004BINDING SITE FOR RESIDUE CMP D1148
04AC4SOFTWAREGLY B:10 , THR B:11 , ASP B:12 , SER B:14 , SER B:16 , SER B:17 , ALA B:38 , ALA B:40 , LEU B:99 , VAL B:113 , GLY B:114 , ASN B:115 , VAL B:116 , VAL B:129 , THR B:146 , HOH B:2006BINDING SITE FOR RESIDUE CMP B1148
05AC5SOFTWAREGLY E:10 , THR E:11 , SER E:14 , SER E:16 , SER E:17 , ALA E:38 , ALA E:40 , PRO E:95 , VAL E:113 , GLY E:114 , ASN E:115 , VAL E:116 , VAL E:129 , THR E:146 , HOH E:2003 , HOH E:2036BINDING SITE FOR RESIDUE CMP E1148
06AC6SOFTWAREGLY F:10 , THR F:11 , ASP F:12 , SER F:14 , SER F:16 , SER F:17 , ALA F:38 , ALA F:40 , PRO F:95 , VAL F:113 , GLY F:114 , ASN F:115 , VAL F:116 , VAL F:129 , THR F:146BINDING SITE FOR RESIDUE CMP F1148
07AC7SOFTWAREVAL D:96 , ASN D:132 , ARG D:136 , POG D:1151 , HOH D:2022 , HOH D:2023 , HOH D:2039 , ARG E:124 , ARG F:135 , ARG F:136BINDING SITE FOR RESIDUE SO4 D1149
08AC8SOFTWARETHR B:120 , ILE B:121 , ARG C:135 , HOH C:2038 , HOH C:2040 , ARG D:124 , HOH D:2040BINDING SITE FOR RESIDUE SO4 D1150
09AC9SOFTWAREARG B:135 , ARG B:136 , HOH B:2052BINDING SITE FOR RESIDUE SO4 B1149
10BC1SOFTWARETHR D:120 , ILE D:121 , HOH D:2031 , ARG E:135 , ARG F:124 , HOH F:2015BINDING SITE FOR RESIDUE SO4 F1149
11BC2SOFTWAREARG A:124 , ARG A:135 , HOH A:2026 , HOH A:2034 , ARG B:124BINDING SITE FOR RESIDUE SO4 A1149
12BC3SOFTWARESER A:14 , ASP A:15 , SER A:16 , LYS D:79BINDING SITE FOR RESIDUE SO4 A1150
13BC4SOFTWAREARG D:136 , VAL F:96 , ASN F:132 , ARG F:136 , POG F:1151 , HOH F:2019BINDING SITE FOR RESIDUE SO4 F1150
14BC5SOFTWAREILE A:121 , HOH A:2029 , PRO B:95 , VAL B:96BINDING SITE FOR RESIDUE CL A1151
15BC6SOFTWAREHOH B:2042 , ARG C:135 , HOH C:2043 , HOH D:2034BINDING SITE FOR RESIDUE CL B1150
16BC7SOFTWAREGLY B:13 , ASP B:15 , HOH B:2008 , GLY C:13 , SER C:14 , ASP C:15 , ALA C:62 , GLY C:63 , GLU C:73 , HOH C:2005 , HOH C:2008 , HOH C:2011 , HOH C:2050 , HOH C:2052 , HOH C:2053 , HOH C:2054 , HOH C:2055 , HOH C:2056BINDING SITE FOR RESIDUE POG C1149
17BC8SOFTWAREILE C:121 , GLY F:127 , SO4 F:1150 , HOH F:2007BINDING SITE FOR RESIDUE POG F1151
18BC9SOFTWAREVAL D:96 , GLY D:127 , VAL D:129 , SO4 D:1149 , HOH D:2021 , HOH D:2036 , ARG E:124 , LEU E:125BINDING SITE FOR RESIDUE POG D1151

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AHW)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5AHW)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5AHW)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5AHW)

(-) Exons   (0, 0)

(no "Exon" information available for 5AHW)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee..hhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ahw A   2 SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS 147
                                    11        21        31        41 ||     72        82        92       102       112       122       132       142     
                                                                    43|                                                                                  
                                                                     65                                                                                  


Chain B from PDB  Type:PROTEIN  Length:127
                                                                                                                                                               
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee...hhhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ahw B   2 SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPGNAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS 147
                                    11        21        31        41 ||     70        80        90       100       110       120       130       140       
                                                                    43|                                                                                    
                                                                     63                                                                                    


Chain C from PDB  Type:PROTEIN  Length:146
                                                                                                                                                                                  
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee.......hhhhhhhhhhh......hhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ahw C   2 SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPQSEDSRAADVLKDEGYKMAGNAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS 147
                                    11        21        31        41        51        61        71        81        91       101       111       121       131       141      


Chain D from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee...hhhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhh..eeeee.....hhhhhhhhhhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5ahw D   2 SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPQAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS 147
                                    11        21        31        41  ||    71        81        91       101       111       121       131       141      
                                                                     44|                                                                                  
                                                                      65                                                                                  


Chain E from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhhhhhh.eeeeeeee...hhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhhh..eeee......hhhhhhhhhhhhhhhhhh..eeee.... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ahw E   2 SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS 147
                                    11        21        31        41 ||     72        82        92       102       112       122       132       142     
                                                                    43|                                                                                  
                                                                     65                                                                                  


Chain F from PDB  Type:PROTEIN  Length:125
                                                                                                                                                             
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....eeeee...hhhhhhhhhhhhhhhhhh..eeeeeeee...hhhhhhhhhhhhhhhh....eeeeeee.hhhhhhhhhhhhh...eeeee.....hhhhhhhhhhhhhhhhhh..eeeee... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------- Transcript
                 5ahw F   2 SAYQTVVVGTDGSDSSLRAVDRAGQIAAASNAKLIIATAYFPAPIYAILREANDRAKAAGATDIEERPVVGAPVDALVELADEVKADLLVVGNVGLSTIAGRLLGSVPANVARRSKTDVLIVHTS 147
                                    11        21        31        41 ||     72        82        92       102       112       122       132       142     
                                                                    43|                                                                                  
                                                                     65
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5AHW)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5AHW)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5AHW)

(-) Gene Ontology  (2, 2)

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