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(-) Description

Title :  VIRULENCE-ASSOCIATED PROTEIN VAPG FROM THE INTRACELLULAR PATHOGEN RHODOCOCCUS EQUI
 
Authors :  T. Okoko, E. V. Blagova, J. L. Whittingham, L. G. Dover, A. J. Wilkinson
Date :  07 Jan 15  (Deposition) - 25 Mar 15  (Release) - 05 Aug 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.80
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  B  (1x)
Keywords :  Immune System, Beta Barrel, Bacterial Pathogen, Virulence Protein, Intracellular Pathogen (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  T. Okoko, E. V. Blagova, J. L. Whittingham, L. G. Dover, A. J. Wilkinson
Structural Characterisation Of The Virulence-Associated Protein Vapg From The Horse Pathogen Rhodococcus Equi.
Vet. Microbiol. V. 179 42 2015
PubMed-ID: 25746683  |  Reference-DOI: 10.1016/J.VETMIC.2015.01.027

(-) Compounds

Molecule 1 - R. EQUI VAPG PROTEIN
    Chains: A, B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PET23B
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Fragment: RESIDUES 27-172
    Organism Scientific: RHODOCOCCUS EQUI
    Organism Taxid: 685727
    Strain: 103S
    Synonym: VIRULENCE-ASSOCIATED PROTEIN G

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): A 
Biological Unit 2 (1x):  B

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1K1Ligand/IonPOTASSIUM ION
Biological Unit 1 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION
Biological Unit 2 (0, 0)
No.NameCountTypeFull Name
1K-1Ligand/IonPOTASSIUM ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASN A:106 , VAL A:108 , TYR A:111 , ASN A:113BINDING SITE FOR RESIDUE K A1158

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5AEO)

(-) Cis Peptide Bonds  (0, 0)

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 Sequence-Structure Mapping

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(-) Sequences/Alignments

Asymmetric Unit
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SAPs(SNPs) PROSITE motifs Exons
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Chain A from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeee...eeeeeeee.....eeeeeee.....eeeeeeeeee..hhhhhhhhh.eeeee....eeeeeee.....eeeeeeee.......eeeeeeeee..... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5aeo A  42 SYSVHGLVTSLAVYQHFSLTVEGGGKTFTGDSGGISIPGVAVLEGTLFTEDLQHLYSDTVSFEYNAVGPYLNINFFDSHGTLLGHVQSGSIGTVSGIGGGTGGWQPKLAA 157
                                    51        61        71        81        91       101       111       121       131       141     ||157
                                                                                                                                   147|   
                                                                                                                                    154   


Chain B from PDB  Type:PROTEIN  Length:110
                                                                                                                                              
               SCOP domains -------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .eeeeeeeeee...eeeeeeee.....eeeeeeeeee..eeeeeeeeee..hhhhhhhhh.eeeeeee..eeeeeee.....eeeeeeee....eeeeeeeeeeee.... Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------- Transcript
                 5aeo B  41 NSYSVHGLVTSLAVYQHFSLTVEGGGKTFTGDSGGISIPGVAVLEGTLFTEDLQHLYSDTVSFEYNAVGPYLNINFFDSHGTLLGHVQSGSIGTVSGIGGGTGGWQPHHH 164
                                    50        60        70        80        90       100       110       120       130       140      |164
                                                                                                                                    147|  
                                                                                                                                     162
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 Classification and Annotation

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