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(-) Description

Title :  2.1-ANGSTROM IN SITU MYLAR STRUCTURE OF BACTERIORHODOPSIN FROM HALOQUADRATUM WALSBYI (HWBR) AT 100 K
 
Authors :  J. Broecker, O. P. Ernst
Date :  21 Jun 16  (Deposition) - 15 Feb 17  (Release) - 15 Feb 17  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.13
Chains :  Asym./Biol. Unit :  A,B,C
Keywords :  Transport Protein, Membrane Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. Broecker, V. Klingel, W. -L. Ou, A. R. Balo, D. J. Kissick, C. M. Ogata A. Kuo, O. P. Ernst
A Versatile System For High-Throughput In Situ X-Ray Screening And Data Collection Of Soluble And Membrane-Protein Crystals.
Cryst. Growth Des. V. 16 6318 2016
PubMed: search  |  Reference-DOI: 10.1021/ACS.CGD.6B00950

(-) Compounds

Molecule 1 - BACTERIORHODOPSIN-I
    Chains: A, B, C
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Gene: BOP1, BOPI, HQ_1014A
    Organism Scientific: HALOQUADRATUM WALSBYI (STRAIN DSM 16790 / HBSQ001)
    Organism Taxid: 362976
    Strain: DSM 16790 / HBSQ001
    Synonym: HWBR,SQUAREBOP I

 Structural Features

(-) Chains, Units

  123
Asymmetric/Biological Unit : ABC

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 12)

Asymmetric/Biological Unit (3, 12)
No.NameCountTypeFull Name
1OLB3Ligand/Ion(2S)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
2OLC6Ligand/Ion(2R)-2,3-DIHYDROXYPROPYL (9Z)-OCTADEC-9-ENOATE
3RET3Ligand/IonRETINAL

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREGLU A:48 , VAL A:51 , ILE A:52 , LEU A:55 , ILE A:59 , ALA A:89 , LEU A:103 , OLC A:303 , ARG B:114 , GLY B:117 , ALA B:118 , PHE B:125 , VAL B:128 , OLC B:301binding site for residue OLC A 301
02AC2SOFTWAREILE A:122 , PHE A:125 , PHE A:155 , TYR A:159 , THR C:24 , ILE C:35 , VAL C:51 , LEU C:55 , ALA C:61 , HOH C:423binding site for residue OLB A 302
03AC3SOFTWAREPRO A:99 , LEU A:103 , LEU A:107 , GLN A:113 , ILE A:116 , OLC A:301binding site for residue OLC A 303
04AC4SOFTWARETRP A:94 , THR A:97 , THR A:98 , MET A:126 , TRP A:146 , SER A:149 , THR A:150 , TRP A:190 , TYR A:193 , ALA A:223 , LYS A:224binding site for residue RET A 304
05AC5SOFTWAREOLC A:301 , LEU B:100 , GLN B:113 , ILE B:116 , ALA B:124binding site for residue OLC B 301
06AC6SOFTWAREVAL B:154 , LEU B:157 , TYR B:158 , VAL B:161 , ALA B:162 , GLY B:165 , GLU B:166binding site for residue OLC B 302
07AC7SOFTWARETHR B:24 , LEU B:28 , MET B:31 , LYS B:47 , ILE B:54 , LEU B:55 , ALA B:58 , LEU B:65 , HOH B:403 , HOH B:421 , ILE C:122 , PHE C:125 , ILE C:148 , SER C:152 , PHE C:155 , TYR C:159binding site for residue OLB B 303
08AC8SOFTWAREPHE B:96 , LEU C:95 , PRO C:99 , LEU C:107 , ALA C:111 , SER C:112 , GLN C:113 , OLB C:303binding site for residue OLC C 301
09AC9SOFTWAREGLU B:48 , VAL B:51 , ILE B:59 , ARG C:114 , ASP C:115 , GLY C:117 , ALA C:118 , ALA C:124 , VAL C:128binding site for residue OLC C 302
10AD1SOFTWAREGLY A:117 , GLY A:121 , VAL A:128 , GLU C:48 , ILE C:59 , PHE C:96 , LEU C:100 , LEU C:103 , OLC C:301 , HOH C:414 , HOH C:415binding site for residue OLB C 303

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KKH)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KKH)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5KKH)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5KKH)

(-) Exons   (0, 0)

(no "Exon" information available for 5KKH)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kkh A  11 LGVEGEGIWLALGTIGMLLGMLYFIADGLDVQDPRQKEFYVITILIPAIAAASYLSMFFGFGLTEVSLANGRVVDVYWARYADWLFTTPLLLLDIGLLAGASQRDIGALVGIDAFMIVTGLVATLTKVVVARYAFWTISTISMVFLLYYLVAVFGEAVSDADEDTRSTFNALRNIILVTWAIYPVAWLVGTEGLALTGLYGETLLFMVLDLVAKVGFGFILLRSRAIM 238
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        


Chain B from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeeehhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kkh B  11 LGVEGEGIWLALGTIGMLLGMLYFIADGLDVQDPRQKEFYVITILIPAIAAASYLSMFFGFGLTEVSLANGRVVDVYWARYADWLFTTPLLLLDIGLLAGASQRDIGALVGIDAFMIVTGLVATLTKVVVARYAFWTISTISMVFLLYYLVAVFGEAVSDADEDTRSTFNALRNIILVTWAIYPVAWLVGTEGLALTGLYGETLLFMVLDLVAKVGFGFILLRSRAIM 238
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230        


Chain C from PDB  Type:PROTEIN  Length:228
                                                                                                                                                                                                                                                                    
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhhh....hhhhhhhhhhhhhhhhhhhhhhhhhhh...eeeee.....eeeeehhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh..hhhhhhhhhhhhhhhhhhhhhhhhhhhhh.......hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kkh C  11 LGVEGEGIWLALGTIGMLLGMLYFIADGLDVQDPRQKEFYVITILIPAIAAASYLSMFFGFGLTEVSLANGRVVDVYWARYADWLFTTPLLLLDIGLLAGASQRDIGALVGIDAFMIVTGLVATLTKVVVARYAFWTISTISMVFLLYYLVAVFGEAVSDADEDTRSTFNALRNIILVTWAIYPVAWLVGTEGLALTGLYGETLLFMVLDLVAKVGFGFILLRSRAIM 238
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230
   Legend:   → Mismatch (orange background)
  - → Gap (green background, '-', border residues have a numbering label)
    → Modified Residue (blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KKH)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KKH)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KKH)

(-) Gene Ontology  (12, 12)

Asymmetric/Biological Unit(hide GO term definitions)

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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        BACR1_HALWD | Q18DH8: 4qi1 4qid 5itc 5ite

(-) Related Entries Specified in the PDB File

5kki 5kkj 5kkk