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(-) Description

Title :  VIBRIO PARAHAEMOLYTICUS VTRA/VTRC COMPLEX
 
Authors :  D. R. Tomchick, K. Orth, G. Rivera-Cancel
Date :  10 Jun 16  (Deposition) - 20 Jul 16  (Release) - 20 Jul 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.70
Chains :  Asym. Unit :  A,B
Biol. Unit 1:  A,B  (1x)
Biol. Unit 2:  A,B  (2x)
Keywords :  Heterodimer, Alpha/Beta, Calycin Beta Barrel Superfamily, Bile Salt Receptor, Transcription, Signaling Protein (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  P. Li, G. Rivera-Cancel, L. N. Kinch, D. Salomon, D. R. Tomchick, N. V. Grishin, K. Orth
Bile Salt Receptor Complex Activates A Pathogenic Type Iii Secretion System.
Elife V. 5 2016
PubMed-ID: 27377244  |  Reference-DOI: 10.7554/ELIFE.15718

(-) Compounds

Molecule 1 - VTRA PROTEIN
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Plasmid: PACYCDUET1
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PLASMID
    Fragment: VTRA C-TERMINAL PERIPLASMIC DOMAIN, UNP RESIDUES 161-253
    Gene: VPA1332
    Organism Taxid: 223926
    Strain: RIMD 2210633
 
Molecule 2 - VTRC PROTEIN
    Chains: B
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21(DE3)
    Expression System Taxid: 469008
    Expression System Vector Type: PACYCDUET1
    Fragment: VTRC C-TERMINAL PERIPLASMIC DOMAIN, UNP RESIDUES 31-161
    Gene: VPA1333
    Organism Taxid: 223926
    Strain: RIMD 2210633

 Structural Features

(-) Chains, Units

  12
Asymmetric Unit : AB
Biological Unit 1 (1x): AB
Biological Unit 2 (2x): AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 1)

Asymmetric Unit (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 1 (1, 1)
No.NameCountTypeFull Name
1SO41Ligand/IonSULFATE ION
Biological Unit 2 (1, 2)
No.NameCountTypeFull Name
1SO42Ligand/IonSULFATE ION

(-) Sites  (1, 1)

Asymmetric Unit (1, 1)
No.NameEvidenceResiduesDescription
1AC1SOFTWARELYS A:228 , ARG A:230 , LYS B:40binding site for residue SO4 A 301

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5KEV)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5KEV)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

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(-) PROSITE Motifs  (0, 0)

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(-) Exons   (0, 0)

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(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
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SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:90
                                                                                                                          
               SCOP domains ------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .....eeee...eeee..hhhhhhhhhhhhhhhhhhh.....eeeeee...eeeeeee.....eeeeeee.....hhhhhhhhhhhhhhh Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------ Transcript
                 5kev A 164 DDYPSLSFQQDYVYIFSSDFQLSEELGVALINALSAKEIVPERLYVMLNDKTISFSFISKNKKSKNRVLSTEKKLNYKHISEYIVNEIEY 253
                                   173       183       193       203       213       223       233       243       253


Chain B from PDB  Type:PROTEIN  Length:126
                                                                                                                                                              
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author ..eeeeeeeeeee.....eeeeeeeeee...eeeeeeeeeee....eeeeeeeeeeeeeeeee..eeeeeeeeeeeee.........hhhhhh...eeeeeeee...eeeeeehhhhheeeeeeee Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5kev B  31 PVHFYETSYKYQAADSTYMHDVAINVSIKGNHFTSDIIIRELVKSENKNYYNVIGHGDIIQKNTHQYYLNFDNIDVYTGTNKYKEPTSISSLINKSNNIRVVYLSEEYVVVEFFFYDGQIITLHRY 161
                                    40        50        60        70        80        90       100       110 ||    125       135       145       155      
                                                                                                           112|                                           
                                                                                                            118
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5KEV)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5KEV)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5KEV)

(-) Gene Ontology  (6, 8)

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 Related Entries

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        Q87GI3_VIBPA | Q87GI3: 5kew
        Q87GI4_VIBPA | Q87GI4: 5kew

(-) Related Entries Specified in the PDB File

5kew