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(-) Description

Title :  MICROED STRUCTURE OF XYLANASE AT 2.3 A RESOLUTION
 
Authors :  M. J. De La Cruz, J. Hattne, D. Shi, P. Seidler, J. Rodriguez, F. E. Reye M. R. Sawaya, D. Cascio, D. Eisenberg, T. Gonen
Date :  26 May 16  (Deposition) - 05 Apr 17  (Release) - 12 Apr 17  (Revision)
Method :  ELECTRON CRYSTALLOGRAPHY
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  M. J. De La Cruz, J. Hattne, D. Shi, P. Seidler, J. Rodriguez, F. E. Reyes, M. R. Sawaya, D. Cascio, S. C. Weiss, S. K. Kim, C. S. Hinck, A. P. Hinck, G. Calero, D. Eisenberg, T. Gonen
Atomic-Resolution Structures From Fragmented Protein Crystals With The Cryoem Method Microed.
Nat. Methods V. 14 399 2017
PubMed-ID: 28192420  |  Reference-DOI: 10.1038/NMETH.4178

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-XYLANASE 2
    Chains: A
    EC Number: 3.2.1.8
    Organism Common: TRICHODERMA REESEI
    Organism Scientific: HYPOCREA JECORINA
    Organism Taxid: 51453
    Synonym: XYLANASE 2,1,4-BETA-D-XYLAN XYLANOHYDROLASE 2

 Structural Features

(-) Chains, Units

  1
Asymmetric/Biological Unit : A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (1, 2)

Asymmetric/Biological Unit (1, 2)
No.NameCountTypeFull Name
1IOD2Ligand/IonIODIDE ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWARESER A:179binding site for residue IOD A 301
2AC2SOFTWAREVAL A:156 , GLN A:158binding site for residue IOD A 302

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5K7P)

(-) Cis Peptide Bonds  (2, 2)

Asymmetric/Biological Unit
No.Residues
1Gln A:85 -Pro A:86
2Asn A:115 -Pro A:116

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5K7P)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5K7P)

(-) Exons   (0, 0)

(no "Exon" information available for 5K7P)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:190
                                                                                                                                                                                                                              
               SCOP domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....eeeee..eeeeeee.....eeeee....eeeeee....eeeeeeee.......eeeeeeeeeee..eeeeeeeeee...eeeeeeeee.........eeeeeeee..eeeeeeeeeeeee......eeeeeeeeee......eeeehhhhhhhhhhh.....eeeeeeeeeeee..eeeeeeeee Sec.struct. author
                 SAPs(SNPs) ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5k7p A  34 QTIQPGTGYNNGYFYSYWNDGHGGVTYTNGPGGQFSVNWSNSGNFVGGKGWQPGTKNKVINFSGSYNPNGNSYLSVYGWSRNPLIEYYIVENFGTYNPSTGATKLGEVTSDGSVYDIYRTQRVNQPSIIGTATFYQYWSVRRNHRSSGSVNTANHFNAWAQQGLTLGTMDYQIVAVEGYFSSGSASITVS 223
                                    43        53        63        73        83        93       103       113       123       133       143       153       163       173       183       193       203       213       223
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5K7P)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5K7P)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5K7P)

(-) Gene Ontology  (8, 8)

Asymmetric/Biological Unit(hide GO term definitions)

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  5k7p
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  XYN2_HYPJR | P36217
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  3.2.1.8
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  XYN2_HYPJR | P36217
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XYN2_HYPJR | P36217: 1enx 1red 1ree 1ref 1xyo 1xyp 2d97 2d98 2dfb 2dfc 3lgr 4hk8 4hk9 4hkl 4hko 4hkw 4s2d 4s2f 4s2g 4s2h 4xpv 4xq4 4xqd 4xqw

(-) Related Entries Specified in the PDB File

5k7n 5k7o 5k7q 5k7r 5k7s 5k7t