5GQW - JenaLib

Asym./Biol. Unit (Jmol Viewer)

Asym./Biol. Unit - sites (Jmol Viewer)

Title :   CRYSTAL STRUCTURE OF BRANCHING ENZYME W610N MUTANT FROM CYANOTHECE SP. ATCC 51142

Authors :   R. Suzuki, E. Suzuki

Date :   08 Aug 16 (Deposition) - 22 Feb 17 (Release) - 12 Apr 17 (Revision)

Method :   X-RAY DIFFRACTION

Resolution :   1.80

Chains :   Asym./Biol. Unit : A

Keywords :   Branching Enzyme, Glycoside Hydrolase Family 13, Cyanobacteria, Starch, Transferase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )

Reference :   M. Hayashi, R. Suzuki, C. Colleoni, S. G. Ball, N. Fujita, E. Suzuki
Bound Substrate In The Structure Of Cyanobacterial Branchin Enzyme Supports A New Mechanistic Model
J. Biol. Chem. V. 292 5465 2017
PubMed-ID: 28193843 | Reference-DOI: 10.1074/JBC.M116.755629
(for further references see the PDB file header)

Molecule 1 - 1,4-ALPHA-GLUCAN BRANCHING ENZYME GLGB
	Atcc	:	51142
	Chains	:	A
	EC Number	:	2.4.1.18
	Engineered	:	YES
	Expression System	:	ESCHERICHIA COLI BL21(DE3)
	Expression System Plasmid	:	PET15B
	Expression System Strain	:	BL21(DE3)
	Expression System Taxid	:	469008
	Expression System Vector Type	:	PLASMID
	Gene	:	GLGB, GLGB1, CCE_2248
	Mutation	:	YES
	Organism Scientific	:	CYANOTHECE SP. (STRAIN ATCC 51142)
	Organism Taxid	:	43989
	Strain	:	ATCC 51142

		1
Asymmetric/Biological Unit	:	A

Summary Information (see also Sequences/Alignments below)

Asymmetric/Biological Unit (2, 9)

No.	Name	Count	Type	Full Name
1	GOL	5	Ligand/Ion	GLYCEROL
2	MG	4	Ligand/Ion	MAGNESIUM ION

Asymmetric Unit (9, 9)

No.	Name	Evidence	Residues	Description
1	AC1	SOFTWARE	TRP A:573 , TYR A:576 , ARG A:580 , GLY A:715 , HOH A:906 , HOH A:941 , HOH A:1032 , HOH A:1422	binding site for residue GOL A 801
2	AC2	SOFTWARE	GLU A:705 , ALA A:711 , ASN A:718 , MET A:719 , GLY A:720 , ASN A:721 , LEU A:722 , HOH A:953 , HOH A:1017 , HOH A:1025 , HOH A:1154	binding site for residue GOL A 802
3	AC3	SOFTWARE	GLU A:448 , GLY A:449 , TRP A:451 , HOH A:1361	binding site for residue GOL A 803
4	AC4	SOFTWARE	TYR A:441 , ASN A:443 , TYR A:444 , THR A:490 , HOH A:1237 , HOH A:1447	binding site for residue GOL A 804
5	AC5	SOFTWARE	GLY A:188 , VAL A:224 , ARG A:343 , GLU A:345 , HOH A:1268 , HOH A:1317 , HOH A:1322 , HOH A:1387	binding site for residue GOL A 805
6	AC6	SOFTWARE	HOH A:902 , HOH A:964 , HOH A:1426 , HOH A:1562 , HOH A:1651 , HOH A:1657	binding site for residue MG A 806
7	AC7	SOFTWARE	ASP A:612 , HOH A:1067 , HOH A:1187 , HOH A:1224 , HOH A:1296 , HOH A:1502	binding site for residue MG A 807
8	AC8	SOFTWARE	HOH A:1024 , HOH A:1083 , HOH A:1199 , HOH A:1509 , HOH A:1603 , HOH A:1676	binding site for residue MG A 808
9	AC9	SOFTWARE	HOH A:962 , HOH A:1016 , HOH A:1053 , HOH A:1291 , HOH A:1571 , HOH A:1708	binding site for residue MG A 809

(no "SS Bond" information available for 5GQW)

Asymmetric/Biological Unit

No.	Residues
1	Arg A:216	-	Pro A:217

(no "SAP(SNP)/Variant" information available for 5GQW)

(no "PROSITE Motif" information available for 5GQW)

(no "Exon" information available for 5GQW)

Asymmetric/Biological Unit

Reformat:	Number of residues per line = ('0' or empty: single-line sequence representation)
	Number of residues per labelling interval =
	UniProt sequence: complete aligned part

Show mapping:	SCOP domains	CATH domains	Pfam domains	Secondary structure (by author)
	SAPs(SNPs)	PROSITE motifs	Exons
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Chain A from PDB  Type:PROTEIN  Length:755
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                   
               SCOP domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .hhhhhhhhhh....hhhhh.eeeeeee....eeeeeeee.....eeeeeehhhheeee.ee.....eeeeeee.......eeeeee..eeeee...........hhhhhhhhhh....hhhhh.eeeeeee..eeeeeeeee.....eeeeee.hhh........eee...eeeeeee......eeeeeee.....eeee...............ee..hhhhh....hhhhhhhhhh.hhhhh..eeeee......eee....eee..eee...........eee.hhhhhhhhhhhhhhhhh..eeee...ee..hhhhh.....eeeee.hhhhhhhhhhhhhhhhhhh..eeeee.........................hhhhhee....ee.....hhhhhhhhhhhhhhhhhhhh..eeee.hhhhhhh...................hhhhhhhhhhhhhhhhhhh...eeee...........hhhhh.....eeehhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.eeeeehhhhh......hhhhh..hhhhhhhhhhhhhhhhhhh..eeeee.................hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh....hhh.eeeee..hhhh.eeeeee...hhhhheeeeee.....eeeeeeee....eeeeeee..hhhhh........eee..........eeeeeee...eeeeeeee..... Sec.struct. author
                 SAPs(SNPs) ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5gqw A   5 ISADQVNQIIYNLHHDPFEILGCHLLEEGKNTKKWVVRAYLPKAEAAWVIRPTERKEDPMNSVHHPNFFECIIETPELNHYQLKVKEGEHEKVIYDPYAFSSPYLTDEDIYLFSEGNHHRIYEKLGAHVGEINGVKGVYFAVWAPNARNVSVIGDFNNWDGREHQMRKRNYTIWELFVPEIGSGTVYKYEIKNSEGHIYEKSDPYGFYREVRPNTASIVVDIDNIYQWHDEEWLEKRRNSDPLKQPVSVYEVHLGSWLHGSSAEKMPLLNGEADPVIVSEWNPGARFLSYYELAEKLIPYVKDMGYTHIELLPIAEHPFDGSWGYQVTGFYSPTSRFGRPEDFMYFVDKCHENGIGVILDWVPGHFPKDSHGLAYFDGTHLYEHADPRIGEHKEWGTLVFNYGRHEVRNFLVANVLFWFDKYHVDGIRVDAVASMLYRNYLRKEGEWIANEYGGDEHIEAVSFIREVNTLLFEYFPGILSIAEESTEWEKVSRPVYDGGLGFNLKWDMGWMHDMLDYFNIDPYFRQYHQNNVTFSMLYYYNENFMLALSHDEIVHGKSNMLGKMPGDEWQKYANVRALFTYMYTHPGKKTMFMSMEFGQWSEWNVNGDLEWHLLQYEPHQQLKQFFTDLNALYQQEPALYTHDFEYHGFEWIDCNDNTHSVVSFLRRSDDPNDSLVVVCNFTPQPHSHYRIGVPEAGYYVELFNSDAKQYGGSNMGNLGGKWADEWSFHNKPYSLDLCLPPLAVLILKLDPTKVP 759
                                    14        24        34        44        54        64        74        84        94       104       114       124       134       144       154       164       174       184       194       204       214       224       234       244       254       264       274       284       294       304       314       324       334       344       354       364       374       384       394       404       414       424       434       444       454       464       474       484       494       504       514       524       534       544       554       564       574       584       594       604       614       624       634       644       654       664       674       684       694       704       714       724       734       744       754

Legend:		→ Mismatch	(orange background)
	-	→ Gap	(green background, '-', border residues have a numbering label)
		→ Modified Residue	(blue background, lower-case, 'x' indicates undefined single-letter code, labelled with number + name)
	x	→ Chemical Group	(purple background, 'x', labelled with number + name, e.g. ACE or NH2)
	extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '\|'

(no "SCOP Domain" information available for 5GQW)

(no "CATH Domain" information available for 5GQW)

(no "Pfam Domain" information available for 5GQW)

Asymmetric/Biological Unit(hide GO term definitions)

Asymmetric/Biological Unit
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	Cis Peptide Bonds
		Arg A:216 - Pro A:217	[ RasMol ]

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	5gqw
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	B1WPM8_CYAA5 \| B1WPM8	:	5gqu 5gqv 5gqx

Description

Compounds

Structural Features

Chains, Units

Ligands, Modified Residues, Ions (2, 9)

Sites (9, 9)

SS Bonds (0, 0)

Cis Peptide Bonds (1, 1)

Sequence-Structure Mapping

SAPs(SNPs)/Variants (0, 0)

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Exons (0, 0)

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Gene Ontology (9, 9)

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