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(-) Description

Title :  STRUCTURE OF FAE SOLVED BY SAD FROM DATA COLLECTED BY DIRECT DATA COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER
 
Authors :  M. W. Bowler, D. Nurizzo
Date :  02 Mar 16  (Deposition) - 16 Mar 16  (Release) - 17 Aug 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  1.99
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (2x)
Keywords :  Hydrolase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  D. Nurizzo, M. W. Bowler, H. Caserotto, F. Dobias, T. Giraud, J. Surr, N. Guichard, G. Papp, M. Guijarro, C. Mueller-Dieckmann, D. Flot, S. Mcsweeney, F. Cipriani, P. Theveneau, G. A. Leonard
Robodiff: Combining A Sample Changer And Goniometer For Highly Automated Macromolecular Crystallography Experiments.
Acta Crystallogr. , Sect. D V. 72 966 2016
PubMed-ID: 27487827  |  Reference-DOI: 10.1107/S205979831601158X

(-) Compounds

Molecule 1 - ENDO-1,4-BETA-XYLANASE Y
    Chains: A
    EC Number: 3.1.1.73
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Strain: BL21
    Expression System Taxid: 511693
    Fragment: RESIDUES 792-1077
    Organism Scientific: RUMINICLOSTRIDIUM THERMOCELLUM
    Organism Taxid: 1515
    Synonym: XYLANASE Y, 1,4-BETA-D-XYLAN XYLANOHYDROLASE Y, XYLY, FERULIC ACID ESTERASE

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (3, 14)

Asymmetric Unit (3, 14)
No.NameCountTypeFull Name
1CD5Ligand/IonCADMIUM ION
2MSE8Mod. Amino AcidSELENOMETHIONINE
3SEP1Mod. Amino AcidPHOSPHOSERINE
Biological Unit 1 (2, 18)
No.NameCountTypeFull Name
1CD-1Ligand/IonCADMIUM ION
2MSE16Mod. Amino AcidSELENOMETHIONINE
3SEP2Mod. Amino AcidPHOSPHOSERINE

(-) Sites  (5, 5)

Asymmetric Unit (5, 5)
No.NameEvidenceResiduesDescription
1AC1SOFTWARECYS A:823 , HIS A:886 , MSE A:889 , GLU A:1017 , HOH A:2027BINDING SITE FOR RESIDUE CD A3086
2AC2SOFTWAREGLU A:894 , HIS A:1076 , GLU A:1079 , HIS A:1083 , HIS A:1085BINDING SITE FOR RESIDUE CD A3087
3AC3SOFTWAREGLU A:1007 , HIS A:1082 , HIS A:1084 , HOH A:2049 , HOH A:2050BINDING SITE FOR RESIDUE CD A3088
4AC4SOFTWAREHIS A:947 , HIS A:1080 , HOH A:2035 , HOH A:2036 , HOH A:2038BINDING SITE FOR RESIDUE CD A3089
5AC5SOFTWAREHIS A:1081BINDING SITE FOR RESIDUE CD A3090

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5FXM)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5FXM)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5FXM)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5FXM)

(-) Exons   (0, 0)

(no "Exon" information available for 5FXM)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:283
                                                                                                                                                                                                                                                                                                                            
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .............hhhhhh......eeeeeeeee..eeeeeeeee...........eeeee...............hhhhhhhhhhhh......eeee...........hhhhhhhhhhhhhhhhhh.......hhhhhhhh...eeeeeehhhhhhhhhhhhhhh....eeeee........hhhhhhhhhhhhhhhhh......eeeeeee....hhhhhhhhhhhhhhh.............eeeeee.....hhhhhhhhhhhhhhhh........... Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                5fxm A  803 SFKYESAVQYRPAPDSYLNPCPQAGRIVKETYTGINGTKSLNVYLPYGYDPNKKYNIFYLmHGGGENENTIFSNDVKLQNILDHAImNGELEPLIVVTPTFNGGNCTAQNFYQEFRQNVIPFVESKYSTYAESTTPQGIAASRmHRGFGGFsmGGLTTWYVmVNCLDYVAYFmPLSGDYWYGNSPQDKANSIAEAINRSGLSKREYFVFAATGSEDIAYANmNPQIEAmKALPHFDYTSDFSKGNFYFLVAPGATHWWGYVRHYIYDALPYFFHELEHHHHHH 1085
                                   812       822       832       842       852       862|      872       882      |892       902       912       922       932       942   |   952 ||    962 |     972  |    982       992      1002      1012      1022 |    1032      1042      1052      1062      1072      1082   
                                                                                      863-MSE                   889-MSE                                                  946-MSE 954-SEP   964-MSE    975-MSE                                         1024-MSE  |                                                      
                                                                                                                                                                                  955-MSE                                                                    1031-MSE
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5FXM)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5FXM)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5FXM)

(-) Gene Ontology  (9, 9)

Asymmetric Unit(hide GO term definitions)

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  5fxm
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  XYNY_CLOTM | P51584
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  3.1.1.73
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 Related Entries

(-) Entries Sharing at Least One Protein Chain (UniProt ID)

UniProtKB/Swiss-Prot
        XYNY_CLOTM | P51584: 1dyo 1gkk 1gkl 1h6x 1h6y 1ohz 1wb4 1wb5 1wb6 2ccl 2w5f 2wys 2wze 3zi7 4bag 4h35

(-) Related Entries Specified in the PDB File

5fxl STRUCTURE OF TRYPSIN SOLVED BY MR FROM DATA COLLECTED BY DIRECT DATA COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER
5fxn STRUCTURE OF THERMOLYSIN SOLVED BY SAD FROM DATA COLLECTED BY DIRECT DATA COLLECTION (DDC) USING THE ESRF ROBODIFF GONIOMETER