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(-) Description

Title :  STRUCTURAL INSIGHTS OF ISOCITRATE LYASES FROM FUSARIUM GRAMINEARUM
 
Authors :  Y. Park, Y. Cho, Y. -H. Lee, Y. -W. Lee, S. Rhee
Date :  15 Oct 15  (Deposition) - 27 Apr 16  (Release) - 18 May 16  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.30
Chains :  Asym./Biol. Unit :  A,B
Keywords :  Tim Beta/Alpha-Barrel, Lyase Activity, Lyase (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  Y. Park, Y. Cho, Y. -H. Lee, Y. -W. Lee, S. Rhee
Crystal Structure And Functional Analysis Of Isocitrate Lyases From Magnaporthe Oryzae And Fusarium Graminearum
J. Struct. Biol. V. 194 395 2016
PubMed-ID: 27016285  |  Reference-DOI: 10.1016/J.JSB.2016.03.019

(-) Compounds

Molecule 1 - ISOCITRATE LYASE
    Chains: A, B
    EC Number: 4.1.3.1, 4.1.3.30
    Engineered: YES
    Expression System: ESCHERICHIA COLI
    Expression System Taxid: 562
    Expression System Vector Type: PLASMID
    Gene: ICL1, FGSG_09896
    Organism Common: WHEAT HEAD BLIGHT FUNGUS
    Organism Scientific: GIBBERELLA ZEAE PH-1
    Organism Taxid: 229533
    Strain: PH-1
    Synonym: ICL,ISOCITRASE,ISOCITRATASE,METHYLISOCITRATE LYASE,MICA, THREO-D(S)-ISOCITRATE GLYOXYLATE-LYASE

 Structural Features

(-) Chains, Units

  12
Asymmetric/Biological Unit : AB

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (2, 2)

Asymmetric/Biological Unit (2, 2)
No.NameCountTypeFull Name
1MLI1Ligand/IonMALONATE ION
2MN1Ligand/IonMANGANESE (II) ION

(-) Sites  (2, 2)

Asymmetric Unit (2, 2)
No.NameEvidenceResiduesDescription
1AC1SOFTWAREASP A:177 , HOH A:714 , HOH A:716 , HOH A:719 , HOH A:727 , HOH A:824binding site for residue MN A 601
2AC2SOFTWARETRP A:108 , CYS A:215 , HIS A:217 , ASN A:432 , SER A:434 , SER A:436 , THR A:466 , LEU A:467 , HOH A:708 , HOH A:714 , HOH A:719 , HOH A:824binding site for residue MLI A 602

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5E9H)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5E9H)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5E9H)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5E9H)

(-) Exons   (0, 0)

(no "Exon" information available for 5E9H)

(-) Sequences/Alignments

Asymmetric/Biological Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:518
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      
               SCOP domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author .....hhhhhhhhhhhhhhhhhhhhhh......hhhhhhh........hhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhh.....eeehhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...........eeee......hhhhhhhhhhhhhhhh..eeeee...............ee.hhhhhhhhhhhhhhhhhhhh...eeeeee......ee....hhhhhh...........hhhhhhhhhhhh..hhhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhh................ee...hhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhh......eeee.....hhhhhhhhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhh.. Sec.struct. author
                 SAPs(SNPs) -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript -------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5e9h A  11 INPDIEDELFQKEVEAVKTWWSDSRWRQTKRPFTAEQIVSKRGYLPIDYASNTQAKKLWKILEHRFENRDASYTYGCLEPTMVTQMAKYLDTVYVSGWQSSSTASASDEPGPDLADYPYTTVPNKVGHLFMAQLFHDRKQRQERLSVPKEQRANLLNIDYLRPIVADADTGHGGLTAVMKLTKLFIEKGAAGIHIEDQAPGTKKCGHMAGKVLVPIQEHINRLVAIRAQADIMGSDLLAIARTDAEAATLLSTNIDPRDHAFILGSTNSTLKPLNDLMIAAEATGKSGAELQRIEDEWLAKANLSSFDDAVAAAIDAGSFSDKAGIKQEYTSRAKGKSNFEARAVARQLLGRDIFFDWDAPRTREGYFRLKGGCDCAVNRAIAYAPYCDAIWMESKLPDFAQAEQFAQGVHAVWPEKKLAYNLSPSFNWKTAMPRDEQETYIRRLAKLGYCWQFITLAGLHTTALISDQFAKAYSTVGMRAYGELVQEPEMDQKVDVVKHQKWSGATYVDELQKMVTG 528
                                    20        30        40        50        60        70        80        90       100       110       120       130       140       150       160       170       180       190       200       210       220       230       240       250       260       270       280       290       300       310       320       330       340       350       360       370       380       390       400       410       420       430       440       450       460       470       480       490       500       510       520        


Chain B from PDB  Type:PROTEIN  Length:528
                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                
               SCOP domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SCOP domains
               CATH domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ CATH domains
               Pfam domains ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Pfam domains
         Sec.struct. author .hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhh........hhhhhhhhhhhhhhhhhhhh...eeee...hhhhhhhhh.....eeehhhhhhhhh...............hhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhh...........eeee......hhhhhhhhhhhhhhhh..eeeee........ee.hhhhhhhhhhhhhhhhhhh....eeeeee......ee....hhhhhhhh.........hhhhhhhhhhhh...hhhhhhhhhhhhhhh...hhhhhhhhhhhhh...hhhhhhhhhhhhhh..hhhhhhhhhhhhhh................ee...hhhhhhhhhhhhhhhh.eeee.....hhhhhhhhhhhhhh......eeee...........hhhhhhhhhhhhhhh.eeeeee.hhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhhhhhhhhhhhhhhhh............hhhhhh. Sec.struct. author
                 SAPs(SNPs) ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ SAPs(SNPs)
                    PROSITE ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ PROSITE
                 Transcript ------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ Transcript
                 5e9h B  12 NPDIEDELFQKEVEAVKTWWSDSRWRQTKRPFTAEQIVSKRGYLPIDYASNTQAKKLWKILEHRFENRDASYTYGCLEPTMVTQMAKYLDTVYVSGWQSSSTASASDEPGPDLADYPYTTVPNKVGHLFMAQLFHDRKQRQERLSVPKEQRANLLNIDYLRPIVADADTGHGGLTAVMKLTKLFIEKGAAGIHIEDQAPGTGKVLVPIQEHINRLVAIRAQADIMGSDLLAIARTDAEAATLLSTNIDPRDHAFILGSTNSTLKPLNDLMIAAEATGKSGAELQRIEDEWLAKANLSSFDDAVAAAIDAGSFSDKAGIKQEYTSRAKGKSNFEARAVARQLLGRDIFFDWDAPRTREGYFRLKGGCDCAVNRAIAYAPYCDAIWMESKLPDFAQAEQFAQGVHAVWPEKKLAYNLSPSFNWKTAMPRDEQETYIRRLAKLGYCWQFITLAGLHTTALISDQFAKAYSTVGMRAYGELVQEPEMDQKVDVVKHQKWSGATYVDELQKMVTGGISSTAAMGAGVTEDQFK 546
                                    21        31        41        51        61        71        81        91       101       111       121       131       141       151       161       171       181       191       201       211||     228       238       248       258       268       278       288       298       308       318       328       338       348       358       368       378       388       398       408       418       428       438       448       458       468       478       488       498       508       518       528       538        
                                                                                                                                                                                                                                  212|                                                                                                                                                                                                                                                                                                                                      
                                                                                                                                                                                                                                   220
   Legend:   → Mismatch (orange background)
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  x → Chemical Group (purple background, 'x', labelled with number + name, e.g. ACE or NH2)
  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5E9H)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5E9H)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5E9H)

(-) Gene Ontology  (11, 11)

Asymmetric/Biological Unit(hide GO term definitions)

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(-) Related Entries Specified in the PDB File

5e9f 5e9g