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(-) Description

Title :  INFLUENZA ENDONUCLEASE COMPLEXED WITH 4-BROMOPYRAZOLE
 
Authors :  J. D. Bauman, E. Arnold
Date :  29 Jul 15  (Deposition) - 30 Dec 15  (Release) - 30 Dec 15  (Revision)
Method :  X-RAY DIFFRACTION
Resolution :  2.00
Chains :  Asym. Unit :  A
Biol. Unit 1:  A  (1x)
Biol. Unit 2:  A  (2x)
Keywords :  4-Bromopyrazole, Phasing, Influenza Endonuclease, Fragment Screening, Transcription (Keyword Search: [Gene Ontology, PubMed, Web (Google)] )
 
Reference :  J. D. Bauman, J. J. E. K. Harrison, E. Arnold
Rapid Experimental Sad Phasing And Hot Spot Identification With Halogenated Fragments
Iucrj V. 3 51 2016
PubMed: search  |  Reference-DOI: 10.1107/S2052252515021259

(-) Compounds

Molecule 1 - ENDONUCLEASE
    Chains: A
    Engineered: YES
    Expression System: ESCHERICHIA COLI BL21(DE3)
    Expression System Plasmid: PCDF-2
    Expression System Taxid: 469008
    Gene: PA
    Organism Scientific: INFLUENZA A VIRUS
    Organism Taxid: 1305075
    Strain: A/CALIFORNIA/02/2010(H1N1)
    Synonym: POLYMERASE ACIDIC PROTEIN

 Structural Features

(-) Chains, Units

  1
Asymmetric Unit : A
Biological Unit 1 (1x): A
Biological Unit 2 (2x): A

Summary Information (see also Sequences/Alignments below)

(-) Ligands, Modified Residues, Ions  (4, 10)

Asymmetric Unit (4, 10)
No.NameCountTypeFull Name
1BYZ5Ligand/Ion4-BROMO-1H-PYRAZOLE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MN3Ligand/IonMANGANESE (II) ION
4SO41Ligand/IonSULFATE ION
Biological Unit 1 (3, 7)
No.NameCountTypeFull Name
1BYZ5Ligand/Ion4-BROMO-1H-PYRAZOLE
2EDO1Ligand/Ion1,2-ETHANEDIOL
3MN-1Ligand/IonMANGANESE (II) ION
4SO41Ligand/IonSULFATE ION
Biological Unit 2 (3, 14)
No.NameCountTypeFull Name
1BYZ10Ligand/Ion4-BROMO-1H-PYRAZOLE
2EDO2Ligand/Ion1,2-ETHANEDIOL
3MN-1Ligand/IonMANGANESE (II) ION
4SO42Ligand/IonSULFATE ION

(-) Sites  (10, 10)

Asymmetric Unit (10, 10)
No.NameEvidenceResiduesDescription
01AC1SOFTWAREHIS A:41 , ASP A:108 , GLU A:119 , ILE A:120 , HOH A:491 , HOH A:521binding site for residue MN A 301
02AC2SOFTWAREGLU A:80 , ASP A:108 , HOH A:424 , HOH A:451 , HOH A:513 , HOH A:521binding site for residue MN A 302
03AC3SOFTWAREHIS A:74binding site for residue MN A 303
04AC4SOFTWAREASN A:33 , LYS A:34 , ARG A:124 , SER A:194 , ARG A:196binding site for residue EDO A 304
05AC5SOFTWAREASP A:27 , ILE A:30 , SER A:149 , PHE A:150 , THR A:151 , GLY A:152 , LYS A:172 , HOH A:487binding site for residue BYZ A 305
06AC6SOFTWARELEU A:16 , LYS A:19 , ALA A:20 , GLU A:23 , GLU A:80 , GLY A:81 , ARG A:82 , ASP A:83 , HOH A:506binding site for residue BYZ A 306
07AC7SOFTWAREPRO A:-3 , ALA A:159 , HOH A:444 , HOH A:458binding site for residue BYZ A 307
08AC8SOFTWARETYR A:24 , GLU A:26 , GLU A:80 , HOH A:429 , HOH A:446 , HOH A:474binding site for residue BYZ A 308
09AC9SOFTWAREILE A:13 , PHE A:46 , ASP A:50binding site for residue BYZ A 309
10AD1SOFTWAREGLN A:7 , CYS A:8 , PHE A:9 , ASN A:10binding site for residue SO4 A 310

(-) SS Bonds  (0, 0)

(no "SS Bond" information available for 5CXR)

(-) Cis Peptide Bonds  (0, 0)

(no "Cis Peptide Bond" information available for 5CXR)

 Sequence-Structure Mapping

(-) SAPs(SNPs)/Variants  (0, 0)

(no "SAP(SNP)/Variant" information available for 5CXR)

(-) PROSITE Motifs  (0, 0)

(no "PROSITE Motif" information available for 5CXR)

(-) Exons   (0, 0)

(no "Exon" information available for 5CXR)

(-) Sequences/Alignments

Asymmetric Unit
   Reformat: Number of residues per line =  ('0' or empty: single-line sequence representation)
  Number of residues per labelling interval =   
  UniProt sequence: complete  aligned part    
   Show mapping: SCOP domains CATH domains Pfam domains Secondary structure (by author)
SAPs(SNPs) PROSITE motifs Exons
(details for a mapped element are shown in a popup box when the mouse pointer rests over it) 
Chain A from PDB  Type:PROTEIN  Length:201
                                                                                                                                                                                                                                         
               SCOP domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SCOP domains
               CATH domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CATH domains
               Pfam domains --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Pfam domains
         Sec.struct. author ....hhhhhhhhhhhhhhhhhhhhhhhhh......hhhhhhhhhhhhhhhhhhhh.eee.....eee..........ee.eee....hhhhhhhhhhhhhhhhh.........eee....eeeeeeee..hhhhhhhhhhhhhh....eeeeee....eee.hhh...hhhhhhhhhhhhhhhhhhhhhh.hhhhhhhhh. Sec.struct. author
                 SAPs(SNPs) --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- SAPs(SNPs)
                    PROSITE --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- PROSITE
                 Transcript --------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- Transcript
                 5cxr A  -4 GPLGSMEDFVRQCFNPMIVELAEKAMKEYGEDPKIETNKFAAICTHLEVCFMYSDFHFIDERGESIIVESGDPNALLKHRFEIIEGRDRIMAWTVVNSICNTTGVEKPKFLPDLYDYKENRFIEIGVTRREVHIYYLEKANKIKSEKTHIHIFSFTGEEMATKADYTLDEESRARIKTRLFTIRQEMASRSLWDSFRQSER 196
                                     5        15        25        35        45        55        65        75        85        95       105       115       125       135       145       155       165       175       185       195
   Legend:   → Mismatch (orange background)
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  extra numbering lines below/above indicate numbering irregularities and modified residue names etc., number ends below/above '|'

 Classification and Annotation

(-) SCOP Domains  (0, 0)

(no "SCOP Domain" information available for 5CXR)

(-) CATH Domains  (0, 0)

(no "CATH Domain" information available for 5CXR)

(-) Pfam Domains  (0, 0)

(no "Pfam Domain" information available for 5CXR)

(-) Gene Ontology  (4, 4)

Asymmetric Unit(hide GO term definitions)

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 Related Entries

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(-) Related Entries Specified in the PDB File

4m5q APO FORM OF THE PROTEIN
5cw1
5cym
5cyq